Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3680

Experiment: L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
4,779,052	-		BT3679	0.25	-1.3
4,779,118	+		BT3679	0.30	-0.1
4,779,185	+		BT3679	0.35	-2.3
4,779,186	-		BT3679	0.35	-1.9
4,779,223	-		BT3679	0.38	-0.9
4,779,347	+		BT3679	0.48	-1.4
4,779,348	-		BT3679	0.48	-4.3
4,779,378	+		BT3679	0.50	-2.3
4,779,378	+		BT3679	0.50	-0.9
4,779,379	-		BT3679	0.50	-3.9
4,779,379	-		BT3679	0.50	-1.5
4,779,380	+		BT3679	0.50	-1.9
4,779,380	+		BT3679	0.50	-0.4
4,779,381	-		BT3679	0.50	+0.7
4,779,381	-		BT3679	0.50	-0.3
4,779,387	-		BT3679	0.51	-1.5
4,779,492	-		BT3679	0.59	-2.3
4,779,505	+		BT3679	0.60	-2.8
4,779,546	+		BT3679	0.63	-0.9
4,779,546	+		BT3679	0.63	+0.1
4,779,608	-		BT3679	0.68	-1.9
4,779,608	-		BT3679	0.68	-2.5
4,779,636	-		BT3679	0.70	-2.5
4,779,674	-		BT3679	0.73	+1.9
4,779,803	-		BT3679	0.83	-1.2
4,779,858	-		BT3679	0.87	-0.2
4,779,858	-		BT3679	0.87	-0.8
4,779,862	-		BT3679	0.88	-4.2
4,779,862	-		BT3679	0.88	-0.8
4,779,862	-		BT3679	0.88	-0.9
4,779,871	-		BT3679	0.88	-1.1
4,779,883	-		BT3679	0.89	+0.5
4,779,888	+		BT3679	0.90	-1.5
4,779,889	-		BT3679	0.90	-0.5
4,779,900	+				-1.9
4,779,929	-				-0.9
4,779,932	+				-2.9
4,779,951	-				+1.1
4,779,968	+				-2.5
4,780,007	+				-0.9
4,780,014	+				+0.1
4,780,015	-				+2.4
4,780,089	+				-2.4
4,780,090	-				-1.8
4,780,109	+				-1.3
4,780,190	+				+0.1
4,780,265	-				-1.9
4,780,266	+				-0.7
4,780,269	-				+1.6
4,780,297	-				-2.8
4,780,302	+				+1.6
4,780,377	+		BT3680	0.11	+0.1
4,780,398	-		BT3680	0.11	+1.8
4,780,398	-		BT3680	0.11	-2.5
4,780,418	+		BT3680	0.12	-1.1
4,780,418	+		BT3680	0.12	-1.2
4,780,459	-		BT3680	0.13	-1.5
4,780,608	+		BT3680	0.18	-1.1
4,780,609	-		BT3680	0.18	-2.7
4,780,645	-		BT3680	0.19	-1.9
4,780,709	+		BT3680	0.22	-2.2
4,780,709	+		BT3680	0.22	+0.9
4,780,710	-		BT3680	0.22	-1.0
4,780,714	-		BT3680	0.22	-1.5
4,780,768	-		BT3680	0.23	+0.1
4,780,771	+		BT3680	0.24	-1.5
4,780,772	-		BT3680	0.24	+0.1
4,780,798	+		BT3680	0.24	-1.3
4,780,810	+		BT3680	0.25	-0.0
4,780,811	-		BT3680	0.25	+1.8
4,780,816	+		BT3680	0.25	-0.5
4,780,817	-		BT3680	0.25	-1.8
4,780,866	-		BT3680	0.27	+0.1
4,780,867	+		BT3680	0.27	-1.3
4,780,884	-		BT3680	0.27	-0.1
4,780,961	+		BT3680	0.30	-1.9
4,780,966	-		BT3680	0.30	-0.3
4,781,037	+		BT3680	0.32	-3.3
4,781,110	-		BT3680	0.34	-1.4
4,781,125	-		BT3680	0.35	-2.4
4,781,178	-		BT3680	0.37	-1.2
4,781,178	-		BT3680	0.37	-1.9
4,781,221	+		BT3680	0.38	-2.3
4,781,222	-		BT3680	0.38	-0.9
4,781,246	+		BT3680	0.39	-1.9
4,781,246	+		BT3680	0.39	-1.6
4,781,246	+		BT3680	0.39	-1.5
4,781,247	-		BT3680	0.39	+2.1
4,781,254	-		BT3680	0.39	+0.1
4,781,273	-		BT3680	0.40	-1.5
4,781,277	+		BT3680	0.40	-3.3
4,781,278	-		BT3680	0.40	+0.8
4,781,305	-		BT3680	0.41	-2.9
4,781,326	+		BT3680	0.41	+0.1
4,781,330	+		BT3680	0.42	-1.5
4,781,330	+		BT3680	0.42	+0.1
4,781,330	+		BT3680	0.42	-1.6
4,781,331	-		BT3680	0.42	+1.5
4,781,331	-		BT3680	0.42	+0.1
4,781,331	-		BT3680	0.42	-3.1
4,781,350	+		BT3680	0.42	-0.9
4,781,352	+		BT3680	0.42	-1.8
4,781,352	+				+0.1
4,781,353	-		BT3680	0.42	-0.9
4,781,353	-		BT3680	0.42	-2.8
4,781,368	+		BT3680	0.43	+0.5
4,781,387	+		BT3680	0.43	-0.9
4,781,409	+		BT3680	0.44	-0.9
4,781,455	-		BT3680	0.46	-2.5
4,781,471	+		BT3680	0.46	+0.1
4,781,472	-		BT3680	0.46	-1.2
4,781,485	-		BT3680	0.47	-0.9
4,781,485	-		BT3680	0.47	-1.6
4,781,538	+		BT3680	0.48	+0.1
4,781,538	+		BT3680	0.48	-0.8
4,781,614	+		BT3680	0.51	-2.3
4,781,636	-		BT3680	0.51	-3.9
4,781,650	-		BT3680	0.52	+0.1
4,781,777	-		BT3680	0.56	-1.5
4,781,783	-		BT3680	0.56	-2.3
4,781,785	-		BT3680	0.56	-3.1
4,781,795	-		BT3680	0.57	-1.0
4,781,855	-		BT3680	0.58	-1.8
4,781,872	-		BT3680	0.59	-0.3
4,781,899	+		BT3680	0.60	-2.2
4,781,900	-		BT3680	0.60	+2.2
4,781,911	-		BT3680	0.60	-0.9
4,782,029	+		BT3680	0.64	-0.6
4,782,093	-		BT3680	0.66	-0.5
4,782,150	+		BT3680	0.68	-0.9
4,782,157	-		BT3680	0.68	-1.9
4,782,181	-		BT3680	0.69	+0.1
4,782,294	+		BT3680	0.73	-2.3
4,782,295	-		BT3680	0.73	-0.9
4,782,299	+		BT3680	0.73	+0.1
4,782,300	-		BT3680	0.73	-1.3
4,782,305	-		BT3680	0.73	-3.4
4,782,306	+		BT3680	0.73	-0.9
4,782,306	+		BT3680	0.73	+1.4
4,782,307	-		BT3680	0.73	-2.1
4,782,307	-		BT3680	0.73	-2.3
4,782,336	+		BT3680	0.74	-0.9
4,782,433	+		BT3680	0.77	+0.1
4,782,468	-		BT3680	0.78	+2.1
4,782,520	-		BT3680	0.80	+0.8
4,782,576	+		BT3680	0.82	+1.2
4,782,590	+		BT3680	0.82	-0.6
4,782,611	+		BT3680	0.83	-1.5
4,782,650	-		BT3680	0.84	-1.5
4,782,669	+		BT3680	0.85	-1.5
4,782,724	+		BT3680	0.86	+0.1
4,782,853	-				-1.8
4,782,889	-				-3.1
4,783,035	-				+0.1
4,783,047	+				+0.1
4,783,115	-				-2.3
4,783,122	-				-0.9
4,783,153	-				+0.9
4,783,173	+				+0.1
4,783,207	-				-2.3
4,783,261	-				-1.3
4,783,318	+				-0.9
4,783,320	+				-3.6
4,783,323	+				-2.2
4,783,340	-				-0.9
4,783,341	+				-2.8
4,783,341	+				-3.6
4,783,342	-				-2.3
4,783,342	-				-3.1
4,783,471	+		BT3681	0.14	-0.6
4,783,483	+		BT3681	0.14	-2.4
4,783,484	-		BT3681	0.14	-1.5
4,783,489	-		BT3681	0.15	-1.0
4,783,489	-		BT3681	0.15	+1.9
4,783,492	+		BT3681	0.15	+0.1
4,783,504	+		BT3681	0.16	-2.3
4,783,519	-		BT3681	0.16	-3.5
4,783,622	-		BT3681	0.21	-0.6
4,783,624	+		BT3681	0.22	-1.0
4,783,723	+		BT3681	0.27	-2.5
4,783,854	+		BT3681	0.33	-0.9
4,783,855	-		BT3681	0.33	-0.9
4,783,861	+		BT3681	0.34	+0.1
4,783,861	+		BT3681	0.34	+0.1
4,783,862	-		BT3681	0.34	-1.9
4,783,879	+		BT3681	0.34	-2.5
4,783,938	-		BT3681	0.37	-2.3
4,783,991	-		BT3681	0.40	-2.1
4,783,991	-		BT3681	0.40	-2.3
4,784,021	-		BT3681	0.42	-1.3
4,784,062	-		BT3681	0.44	-1.5
4,784,096	-		BT3681	0.45	+1.6