Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3562

Experiment: L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
4,606,371	+				-3.1
4,606,371	+				-1.0
4,606,375	+				+0.0
4,606,375	+				+1.6
4,606,376	-				-1.3
4,606,376	-				+1.3
4,606,395	+				+1.0
4,606,396	-				+0.0
4,606,399	+				-2.0
4,606,400	-				-1.5
4,606,427	-				-2.0
4,606,429	+				-4.0
4,606,430	-				+0.0
4,606,474	+				-1.5
4,606,475	-				-2.8
4,606,478	+				-2.0
4,606,571	-				-2.0
4,606,586	-				-3.0
4,606,607	+		BT3561	0.12	+0.0
4,606,612	+		BT3561	0.12	-2.7
4,606,612	+		BT3561	0.12	-4.3
4,606,612	+		BT3561	0.12	-3.1
4,606,624	-		BT3561	0.14	-2.5
4,606,624	-		BT3561	0.14	-2.0
4,606,624	-		BT3561	0.14	-0.3
4,606,668	-		BT3561	0.19	+0.5
4,606,732	-		BT3561	0.27	-0.9
4,606,732	-		BT3561	0.27	-0.0
4,606,734	+		BT3561	0.27	-1.0
4,606,735	-		BT3561	0.27	-3.7
4,606,737	+		BT3561	0.27	-1.0
4,606,737	+		BT3561	0.27	-2.0
4,606,738	-		BT3561	0.28	-1.5
4,606,798	+		BT3561	0.35	-2.3
4,606,799	-		BT3561	0.35	-2.8
4,606,799	-		BT3561	0.35	+1.0
4,606,806	+		BT3561	0.36	-1.0
4,606,806	+		BT3561	0.36	-0.9
4,606,829	+		BT3561	0.38	-2.1
4,606,830	-		BT3561	0.39	-0.7
4,606,830	-		BT3561	0.39	-1.0
4,606,834	+		BT3561	0.39	-0.5
4,606,884	+		BT3561	0.45	+0.0
4,606,885	-		BT3561	0.45	+0.0
4,606,912	-		BT3561	0.48	-0.3
4,606,915	+		BT3561	0.49	-1.0
4,606,916	-		BT3561	0.49	+0.0
4,606,919	-		BT3561	0.49	-0.0
4,606,919	-		BT3561	0.49	-1.0
4,606,942	+		BT3561	0.52	-0.7
4,606,984	+		BT3561	0.57	-1.5
4,607,048	+		BT3561	0.65	-2.0
4,607,048	+		BT3561	0.65	-1.0
4,607,053	+		BT3561	0.65	-2.7
4,607,070	+		BT3561	0.67	-1.0
4,607,071	-		BT3561	0.68	-1.3
4,607,092	+		BT3561	0.70	+1.0
4,607,092	+		BT3561	0.70	+0.0
4,607,098	+		BT3561	0.71	-2.7
4,607,098	+		BT3561	0.71	-1.5
4,607,119	+		BT3561	0.73	+1.3
4,607,168	-		BT3561	0.79	+0.2
4,607,217	-		BT3561	0.85	+0.0
4,607,217	-		BT3561	0.85	+0.0
4,607,222	-		BT3561	0.86	-0.5
4,607,265	+				+0.0
4,607,266	-				-1.0
4,607,266	-				-2.2
4,607,266	-				+1.6
4,607,269	+				+0.0
4,607,283	-				-2.5
4,607,284	+				+0.0
4,607,291	-				-3.0
4,607,304	+				-2.5
4,607,304	+				-2.5
4,607,309	-				-1.3
4,607,309	-				-2.0
4,607,323	+				+0.0
4,607,336	-				+2.0
4,607,441	+				+0.3
4,607,442	-				-2.3
4,607,442	-				-1.5
4,607,510	+				-1.9
4,607,517	+				-1.4
4,607,543	-				-1.5
4,607,569	+		BT3562	0.10	-1.0
4,607,570	-		BT3562	0.11	+0.0
4,607,596	+		BT3562	0.12	-2.8
4,607,690	-		BT3562	0.17	+0.0
4,607,690	-		BT3562	0.17	-1.3
4,607,704	-		BT3562	0.17	-1.5
4,607,704	-		BT3562	0.17	-1.0
4,607,704	-		BT3562	0.17	-0.0
4,607,780	-		BT3562	0.21	-1.0
4,607,888	-		BT3562	0.27	+0.0
4,607,894	-		BT3562	0.27	-1.5
4,607,993	-		BT3562	0.32	-1.5
4,607,993	-		BT3562	0.32	+0.2
4,608,014	-		BT3562	0.33	+0.0
4,608,037	+		BT3562	0.34	-2.0
4,608,038	-		BT3562	0.34	-1.0
4,608,056	-		BT3562	0.35	-2.0
4,608,068	+		BT3562	0.36	-1.6
4,608,069	-		BT3562	0.36	+0.0
4,608,069	-		BT3562	0.36	-1.0
4,608,070	+		BT3562	0.36	+0.4
4,608,071	-		BT3562	0.36	-1.4
4,608,079	+		BT3562	0.36	-1.5
4,608,079	+		BT3562	0.36	-2.3
4,608,087	-		BT3562	0.37	-1.3
4,608,152	-		BT3562	0.40	-2.3
4,608,183	+		BT3562	0.42	-1.1
4,608,183	+		BT3562	0.42	-1.4
4,608,185	+		BT3562	0.42	-2.0
4,608,192	-		BT3562	0.42	-2.0
4,608,240	+		BT3562	0.45	+1.0
4,608,250	+		BT3562	0.45	-1.5
4,608,250	+		BT3562	0.45	-1.2
4,608,250	+		BT3562	0.45	+0.0
4,608,250	+		BT3562	0.45	-1.5
4,608,251	-		BT3562	0.45	-2.0
4,608,263	-		BT3562	0.46	+0.7
4,608,270	+		BT3562	0.46	-2.5
4,608,298	+		BT3562	0.48	-2.0
4,608,302	-		BT3562	0.48	-1.6
4,608,377	-		BT3562	0.52	-1.0
4,608,377	-		BT3562	0.52	-1.5
4,608,379	+		BT3562	0.52	-4.0
4,608,419	-		BT3562	0.54	-1.8
4,608,478	-		BT3562	0.57	-3.4
4,608,494	+		BT3562	0.58	-0.7
4,608,535	-		BT3562	0.60	-2.5
4,608,558	+		BT3562	0.61	+0.3
4,608,589	+		BT3562	0.62	-0.6
4,608,613	+		BT3562	0.64	-3.0
4,608,628	+		BT3562	0.64	-1.0
4,608,664	-		BT3562	0.66	-0.7
4,608,664	-		BT3562	0.66	-2.4
4,608,667	+		BT3562	0.66	-0.3
4,608,676	+		BT3562	0.67	-1.0
4,608,678	+		BT3562	0.67	-2.7
4,608,679	-		BT3562	0.67	+2.2
4,608,746	+		BT3562	0.70	+1.2
4,608,747	-		BT3562	0.70	-3.1
4,608,748	+		BT3562	0.70	-1.8
4,608,796	-		BT3562	0.73	+0.0
4,608,834	+		BT3562	0.75	-0.4
4,608,843	+		BT3562	0.75	+1.2
4,608,858	-		BT3562	0.76	-1.0
4,608,880	-		BT3562	0.77	-2.1
4,608,890	+		BT3562	0.78	-1.5
4,608,891	-		BT3562	0.78	+0.0
4,608,893	-		BT3562	0.78	-2.5
4,608,901	+		BT3562	0.78	+1.6
4,608,902	-		BT3562	0.78	-1.2
4,608,919	+		BT3562	0.79	+0.0
4,608,920	-		BT3562	0.79	-1.0
4,608,951	+		BT3562	0.81	-1.9
4,608,951	+		BT3562	0.81	-2.8
4,609,008	+		BT3562	0.84	-0.5
4,609,018	+		BT3562	0.84	+0.4
4,609,038	-		BT3562	0.85	+0.6
4,609,040	+		BT3562	0.85	+4.0
4,609,040	+		BT3562	0.85	+0.0
4,609,054	+		BT3562	0.86	-1.0
4,609,054	+		BT3562	0.86	-2.8
4,609,054	+		BT3562	0.86	-1.5
4,609,055	-		BT3562	0.86	-1.2
4,609,055	-		BT3562	0.86	-1.1
4,609,059	+		BT3562	0.86	-0.4
4,609,060	-		BT3562	0.86	+1.4
4,609,073	-		BT3562	0.87	-1.4
4,609,082	-		BT3562	0.87	-1.0
4,609,108	+		BT3562	0.89	-2.3
4,609,108	+		BT3562	0.89	-2.9
4,609,108	+		BT3562	0.89	-2.3
4,609,108	+		BT3562	0.89	-0.8
4,609,120	+		BT3562	0.89	-2.8
4,609,121	-		BT3562	0.89	+0.0
4,609,123	+		BT3562	0.90	+2.2
4,609,123	+		BT3562	0.90	+0.8
4,609,123	+		BT3562	0.90	-0.5
4,609,124	-		BT3562	0.90	-0.5
4,609,130	-		BT3562	0.90	+0.2
4,609,162	+				-1.4
4,609,163	-				-1.5
4,609,177	-				-0.2
4,609,177	-				-2.8
4,609,195	+				-1.5
4,609,210	+				+0.5
4,609,210	+				-1.5
4,609,210	+				-1.0
4,609,211	-				-1.0
4,609,217	+				-2.8
4,609,232	-				-2.7
4,609,246	-				-1.0
4,609,256	-				-2.3
4,609,256	-				-1.9
4,609,274	+				-2.5
4,609,329	+				-3.0
4,609,330	-				-2.8
4,609,342	+				-1.5
4,609,343	-				-1.9
4,609,357	+				+0.4
4,609,360	-				+0.8
4,609,372	+				-2.1
4,609,372	+				-0.8
4,609,373	-				-2.3
4,609,375	+				+0.2
4,609,417	+				-2.0
4,609,418	-				-0.6
4,609,466	-				+0.6
4,609,508	-		BT3563	0.12	+0.0
4,609,591	-		BT3563	0.21	-0.1
4,609,594	+		BT3563	0.22	-4.3
4,609,598	+		BT3563	0.22	-2.0
4,609,599	-		BT3563	0.22	-3.8
4,609,599	-		BT3563	0.22	-2.3
4,609,600	+		BT3563	0.22	-3.0
4,609,604	-		BT3563	0.23	+0.3
4,609,610	+		BT3563	0.23	-1.2
4,609,611	-		BT3563	0.24	+0.3
4,609,652	+		BT3563	0.28	+0.0
4,609,652	+		BT3563	0.28	-2.0
4,609,657	+		BT3563	0.29	+0.0
4,609,657	+		BT3563	0.29	-1.0
4,609,663	-		BT3563	0.29	+0.0
4,609,687	+		BT3563	0.32	-2.0
4,609,791	-		BT3563	0.44	-3.7
4,609,805	-		BT3563	0.46	-3.0
4,609,860	-		BT3563	0.52	-1.8
4,609,863	-		BT3563	0.52	+0.0
4,609,864	+		BT3563	0.52	-3.3
4,609,870	+		BT3563	0.53	+0.0
4,609,890	-		BT3563	0.55	-0.5
4,609,903	+		BT3563	0.57	-5.2
4,609,940	-		BT3563	0.61	-1.3
4,609,954	+		BT3563	0.62	-0.8
4,609,955	-		BT3563	0.63	-2.0
4,609,976	+		BT3563	0.65	-0.5
4,609,976	+		BT3563	0.65	-1.6
4,609,997	-		BT3563	0.67	-1.0
4,610,017	-		BT3563	0.70	-1.0
4,610,017	-		BT3563	0.70	-1.5
4,610,024	+		BT3563	0.70	+2.1
4,610,026	+		BT3563	0.71	-1.5
4,610,026	+		BT3563	0.71	-1.4
4,610,027	-		BT3563	0.71	-4.5
4,610,027	-		BT3563	0.71	-2.8
4,610,027	-		BT3563	0.71	+0.0
4,610,060	+		BT3563	0.74	-1.5
4,610,101	+		BT3563	0.79	-1.5
4,610,134	+		BT3563	0.83	-3.0
4,610,135	-		BT3563	0.83	+2.1
4,610,152	-		BT3563	0.85	-1.0
4,610,165	-		BT3563	0.86	-2.4
4,610,191	-		BT3563	0.89	-2.0
4,610,212	+				-3.0
4,610,242	-				-1.5
4,610,248	+				-1.5
4,610,248	+				-1.5
4,610,252	+				+2.5
4,610,259	+				-1.5
4,610,288	-				-0.5
4,610,302	-				+0.6
4,610,303	+				+0.0
4,610,309	+				-1.3
4,610,313	+				-2.8