Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1569

Experiment: L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT1567 and BT1568 are separated by 142 nucleotidesBT1568 and BT1569 overlap by 16 nucleotidesBT1569 and BT1570 are separated by 59 nucleotides BT1567: BT1567 - conserved hypothetical protein (NCBI ptt file), at 1,931,321 to 1,932,001 BT1567 BT1568: BT1568 - conserved hypothetical protein (NCBI ptt file), at 1,932,144 to 1,932,431 BT1568 BT1569: BT1569 - conserved hypothetical protein (NCBI ptt file), at 1,932,416 to 1,933,006 BT1569 BT1570: BT1570 - conserved hypothetical protein (NCBI ptt file), at 1,933,066 to 1,935,243 BT1570 Position (kb) 1932 1933 1934Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1931.801 kb on - strand, within BT1567at 1931.804 kb on - strand, within BT1567at 1931.849 kb on - strand, within BT1567at 1931.855 kb on - strand, within BT1567at 1932.033 kb on - strandat 1932.287 kb on + strand, within BT1568at 1932.483 kb on - strand, within BT1569at 1932.507 kb on + strand, within BT1569at 1932.508 kb on - strand, within BT1569at 1932.575 kb on - strand, within BT1569at 1932.589 kb on + strand, within BT1569at 1932.656 kb on - strand, within BT1569at 1932.735 kb on - strand, within BT1569at 1932.863 kb on + strand, within BT1569at 1932.899 kb on + strand, within BT1569at 1933.359 kb on - strand, within BT1570at 1933.377 kb on + strand, within BT1570at 1933.379 kb on + strand, within BT1570at 1933.425 kb on + strand, within BT1570at 1933.426 kb on - strand, within BT1570at 1933.604 kb on - strand, within BT1570at 1933.681 kb on - strand, within BT1570at 1933.722 kb on + strand, within BT1570at 1933.761 kb on + strand, within BT1570at 1933.817 kb on - strand, within BT1570at 1933.817 kb on - strand, within BT1570at 1933.817 kb on - strand, within BT1570at 1933.829 kb on + strand, within BT1570at 1933.884 kb on + strand, within BT1570at 1933.987 kb on - strand, within BT1570at 1933.997 kb on + strand, within BT1570

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
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1,931,801 - BT1567 0.70 -0.0
1,931,804 - BT1567 0.71 -1.0
1,931,849 - BT1567 0.78 -3.0
1,931,855 - BT1567 0.78 -3.2
1,932,033 - -1.6
1,932,287 + BT1568 0.50 -1.0
1,932,483 - BT1569 0.11 -0.0
1,932,507 + BT1569 0.15 -0.4
1,932,508 - BT1569 0.16 -0.0
1,932,575 - BT1569 0.27 -1.0
1,932,589 + BT1569 0.29 +1.3
1,932,656 - BT1569 0.41 -1.6
1,932,735 - BT1569 0.54 -2.0
1,932,863 + BT1569 0.76 -1.0
1,932,899 + BT1569 0.82 -4.2
1,933,359 - BT1570 0.13 -0.0
1,933,377 + BT1570 0.14 -1.0
1,933,379 + BT1570 0.14 -0.7
1,933,425 + BT1570 0.16 -0.0
1,933,426 - BT1570 0.17 -2.6
1,933,604 - BT1570 0.25 -0.9
1,933,681 - BT1570 0.28 -0.4
1,933,722 + BT1570 0.30 -0.0
1,933,761 + BT1570 0.32 +2.3
1,933,817 - BT1570 0.34 +1.8
1,933,817 - BT1570 0.34 -0.0
1,933,817 - BT1570 0.34 -3.0
1,933,829 + BT1570 0.35 -2.0
1,933,884 + BT1570 0.38 -3.0
1,933,987 - BT1570 0.42 -1.0
1,933,997 + BT1570 0.43 -0.8

Or see this region's nucleotide sequence