Experiment: L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT1567 and BT1568 are separated by 142 nucleotides BT1568 and BT1569 overlap by 16 nucleotides BT1569 and BT1570 are separated by 59 nucleotides
BT1567: BT1567 - conserved hypothetical protein (NCBI ptt file), at 1,931,321 to 1,932,001
BT1567
BT1568: BT1568 - conserved hypothetical protein (NCBI ptt file), at 1,932,144 to 1,932,431
BT1568
BT1569: BT1569 - conserved hypothetical protein (NCBI ptt file), at 1,932,416 to 1,933,006
BT1569
BT1570: BT1570 - conserved hypothetical protein (NCBI ptt file), at 1,933,066 to 1,935,243
BT1570
Position (kb)
1932
1933
1934 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1931.801 kb on - strand, within BT1567 at 1931.804 kb on - strand, within BT1567 at 1931.849 kb on - strand, within BT1567 at 1931.855 kb on - strand, within BT1567 at 1932.033 kb on - strand at 1932.287 kb on + strand, within BT1568 at 1932.483 kb on - strand, within BT1569 at 1932.507 kb on + strand, within BT1569 at 1932.508 kb on - strand, within BT1569 at 1932.575 kb on - strand, within BT1569 at 1932.589 kb on + strand, within BT1569 at 1932.656 kb on - strand, within BT1569 at 1932.735 kb on - strand, within BT1569 at 1932.863 kb on + strand, within BT1569 at 1932.899 kb on + strand, within BT1569 at 1933.359 kb on - strand, within BT1570 at 1933.377 kb on + strand, within BT1570 at 1933.379 kb on + strand, within BT1570 at 1933.425 kb on + strand, within BT1570 at 1933.426 kb on - strand, within BT1570 at 1933.604 kb on - strand, within BT1570 at 1933.681 kb on - strand, within BT1570 at 1933.722 kb on + strand, within BT1570 at 1933.761 kb on + strand, within BT1570 at 1933.817 kb on - strand, within BT1570 at 1933.817 kb on - strand, within BT1570 at 1933.817 kb on - strand, within BT1570 at 1933.829 kb on + strand, within BT1570 at 1933.884 kb on + strand, within BT1570 at 1933.987 kb on - strand, within BT1570 at 1933.997 kb on + strand, within BT1570
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen remove 1,931,801 - BT1567 0.70 -0.0 1,931,804 - BT1567 0.71 -1.0 1,931,849 - BT1567 0.78 -3.0 1,931,855 - BT1567 0.78 -3.2 1,932,033 - -1.6 1,932,287 + BT1568 0.50 -1.0 1,932,483 - BT1569 0.11 -0.0 1,932,507 + BT1569 0.15 -0.4 1,932,508 - BT1569 0.16 -0.0 1,932,575 - BT1569 0.27 -1.0 1,932,589 + BT1569 0.29 +1.3 1,932,656 - BT1569 0.41 -1.6 1,932,735 - BT1569 0.54 -2.0 1,932,863 + BT1569 0.76 -1.0 1,932,899 + BT1569 0.82 -4.2 1,933,359 - BT1570 0.13 -0.0 1,933,377 + BT1570 0.14 -1.0 1,933,379 + BT1570 0.14 -0.7 1,933,425 + BT1570 0.16 -0.0 1,933,426 - BT1570 0.17 -2.6 1,933,604 - BT1570 0.25 -0.9 1,933,681 - BT1570 0.28 -0.4 1,933,722 + BT1570 0.30 -0.0 1,933,761 + BT1570 0.32 +2.3 1,933,817 - BT1570 0.34 +1.8 1,933,817 - BT1570 0.34 -0.0 1,933,817 - BT1570 0.34 -3.0 1,933,829 + BT1570 0.35 -2.0 1,933,884 + BT1570 0.38 -3.0 1,933,987 - BT1570 0.42 -1.0 1,933,997 + BT1570 0.43 -0.8
Or see this region's nucleotide sequence