Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1076

Experiment: L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT1075 and BT1076 overlap by 8 nucleotidesBT1076 and tRNA-Asp are separated by 137 nucleotidestRNA-Asp and BT1077 are separated by 157 nucleotides BT1075: BT1075 - putative two-component system sensor protein, but no histidine kinase domain (NCBI ptt file), at 1,361,784 to 1,362,821 BT1075 BT1076: BT1076 - two-component system response regulator (NCBI ptt file), at 1,362,814 to 1,363,593 BT1076 BT_t19: tRNA-Asp - tRNA-Asp (RefSeq), at 1,363,731 to 1,363,804 tRNA-Asp BT1077: BT1077 - putative aspartate aminotransferase (NCBI ptt file), at 1,363,962 to 1,365,278 BT1077 Position (kb) 1362 1363 1364Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1361.918 kb on + strand, within BT1075at 1361.927 kb on - strand, within BT1075at 1362.050 kb on + strand, within BT1075at 1362.120 kb on - strand, within BT1075at 1362.189 kb on - strand, within BT1075at 1362.332 kb on + strand, within BT1075at 1362.334 kb on + strand, within BT1075at 1362.404 kb on + strand, within BT1075at 1362.405 kb on - strand, within BT1075at 1362.405 kb on - strand, within BT1075at 1362.409 kb on + strand, within BT1075at 1362.409 kb on + strand, within BT1075at 1362.468 kb on + strand, within BT1075at 1362.591 kb on - strand, within BT1075at 1362.597 kb on - strand, within BT1075at 1362.597 kb on - strand, within BT1075at 1362.640 kb on - strand, within BT1075at 1362.686 kb on - strand, within BT1075at 1362.719 kb on - strandat 1362.761 kb on + strandat 1362.764 kb on + strandat 1362.876 kb on + strandat 1362.876 kb on + strandat 1362.882 kb on - strandat 1362.914 kb on + strand, within BT1076at 1363.092 kb on + strand, within BT1076at 1363.115 kb on + strand, within BT1076at 1363.132 kb on - strand, within BT1076at 1363.256 kb on - strand, within BT1076at 1363.328 kb on - strand, within BT1076at 1363.454 kb on + strand, within BT1076at 1363.541 kb on + strandat 1363.562 kb on + strandat 1363.625 kb on + strandat 1363.886 kb on - strandat 1364.244 kb on - strand, within BT1077at 1364.304 kb on - strand, within BT1077at 1364.410 kb on + strand, within BT1077at 1364.504 kb on + strand, within BT1077at 1364.505 kb on - strand, within BT1077at 1364.517 kb on - strand, within BT1077

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
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1,361,918 + BT1075 0.13 +0.1
1,361,927 - BT1075 0.14 -3.4
1,362,050 + BT1075 0.26 -1.9
1,362,120 - BT1075 0.32 -1.8
1,362,189 - BT1075 0.39 -2.9
1,362,332 + BT1075 0.53 -1.9
1,362,334 + BT1075 0.53 -0.9
1,362,404 + BT1075 0.60 +0.1
1,362,405 - BT1075 0.60 -2.2
1,362,405 - BT1075 0.60 -3.6
1,362,409 + BT1075 0.60 -3.1
1,362,409 + BT1075 0.60 +0.8
1,362,468 + BT1075 0.66 +1.1
1,362,591 - BT1075 0.78 -1.1
1,362,597 - BT1075 0.78 -0.9
1,362,597 - BT1075 0.78 +0.1
1,362,640 - BT1075 0.82 -2.5
1,362,686 - BT1075 0.87 +1.6
1,362,719 - +2.7
1,362,761 + +0.1
1,362,764 + +0.1
1,362,876 + -1.9
1,362,876 + -4.6
1,362,882 - -0.9
1,362,914 + BT1076 0.13 +1.7
1,363,092 + BT1076 0.36 +0.1
1,363,115 + BT1076 0.39 +2.8
1,363,132 - BT1076 0.41 -1.0
1,363,256 - BT1076 0.57 +1.2
1,363,328 - BT1076 0.66 -1.5
1,363,454 + BT1076 0.82 -0.7
1,363,541 + -2.7
1,363,562 + +0.1
1,363,625 + -0.9
1,363,886 - -0.3
1,364,244 - BT1077 0.21 -0.4
1,364,304 - BT1077 0.26 -1.2
1,364,410 + BT1077 0.34 -1.9
1,364,504 + BT1077 0.41 -1.5
1,364,505 - BT1077 0.41 +1.5
1,364,517 - BT1077 0.42 -1.2

Or see this region's nucleotide sequence