Experiment: L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0686 and BT_0687 are separated by 147 nucleotides BT_0687 and BT0688 are separated by 203 nucleotides BT0688 and BT0689 are separated by 11 nucleotides
BT0686: BT0686 - putative uracil permease (uracil transporter) (NCBI ptt file), at 853,046 to 854,230
BT0686
BT_0687: BT_0687 - hydroxylamine reductase (RefSeq), at 854,378 to 856,003
_0687
BT0688: BT0688 - cAMP-binding domain (catabolite gene activator) transcriptional regulator (NCBI ptt file), at 856,207 to 856,875
BT0688
BT0689: BT0689 - putative two-component system sensor histidine kinase (NCBI ptt file), at 856,887 to 858,203
BT0689
Position (kb) 854
855
856
857 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 853.402 kb on + strand, within BT0686 at 853.418 kb on - strand, within BT0686 at 853.457 kb on - strand, within BT0686 at 853.549 kb on + strand, within BT0686 at 853.735 kb on - strand, within BT0686 at 853.737 kb on - strand, within BT0686 at 853.737 kb on - strand, within BT0686 at 853.753 kb on + strand, within BT0686 at 853.859 kb on + strand, within BT0686 at 853.936 kb on + strand at 853.937 kb on - strand, within BT0686 at 853.941 kb on + strand, within BT0686 at 854.047 kb on - strand, within BT0686 at 854.051 kb on - strand, within BT0686 at 854.051 kb on - strand, within BT0686 at 854.068 kb on + strand, within BT0686 at 854.068 kb on + strand, within BT0686 at 854.196 kb on + strand at 854.211 kb on + strand at 854.316 kb on + strand at 854.317 kb on - strand at 854.345 kb on - strand at 854.356 kb on - strand at 854.362 kb on + strand at 854.366 kb on + strand at 854.367 kb on - strand at 854.447 kb on + strand at 854.486 kb on + strand at 854.500 kb on + strand at 854.501 kb on - strand at 854.556 kb on + strand, within BT_0687 at 854.557 kb on - strand, within BT_0687 at 854.573 kb on + strand, within BT_0687 at 854.574 kb on - strand, within BT_0687 at 854.657 kb on - strand, within BT_0687 at 854.725 kb on - strand, within BT_0687 at 854.787 kb on + strand, within BT_0687 at 854.807 kb on - strand, within BT_0687 at 854.868 kb on - strand, within BT_0687 at 854.891 kb on + strand, within BT_0687 at 854.892 kb on - strand, within BT_0687 at 855.059 kb on - strand, within BT_0687 at 855.070 kb on - strand, within BT_0687 at 855.243 kb on + strand, within BT_0687 at 855.244 kb on - strand, within BT_0687 at 855.251 kb on + strand, within BT_0687 at 855.254 kb on - strand, within BT_0687 at 855.636 kb on - strand, within BT_0687 at 855.741 kb on - strand, within BT_0687 at 855.893 kb on + strand at 855.894 kb on - strand at 856.003 kb on + strand at 856.034 kb on - strand at 856.086 kb on - strand at 856.141 kb on - strand at 856.146 kb on + strand at 856.180 kb on + strand at 856.180 kb on + strand at 856.397 kb on - strand, within BT0688 at 856.417 kb on + strand, within BT0688 at 856.417 kb on + strand, within BT0688 at 856.479 kb on - strand, within BT0688 at 856.976 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen remove 853,402 + BT0686 0.30 -0.0 853,418 - BT0686 0.31 -1.0 853,457 - BT0686 0.35 -3.0 853,549 + BT0686 0.42 -1.9 853,735 - BT0686 0.58 -0.0 853,737 - BT0686 0.58 -1.0 853,737 - BT0686 0.58 -2.0 853,753 + BT0686 0.60 -2.6 853,859 + BT0686 0.69 -1.0 853,936 + -1.6 853,937 - BT0686 0.75 -2.4 853,941 + BT0686 0.76 -0.5 854,047 - BT0686 0.84 -0.7 854,051 - BT0686 0.85 -0.5 854,051 - BT0686 0.85 -0.0 854,068 + BT0686 0.86 -0.6 854,068 + BT0686 0.86 -0.0 854,196 + -1.6 854,211 + -2.0 854,316 + -0.0 854,317 - -2.2 854,345 - +1.5 854,356 - -0.0 854,362 + -1.6 854,366 + -0.7 854,367 - -2.4 854,447 + -2.6 854,486 + -0.0 854,500 + -3.5 854,501 - -3.0 854,556 + BT_0687 0.11 -1.1 854,557 - BT_0687 0.11 -1.0 854,573 + BT_0687 0.12 -0.0 854,574 - BT_0687 0.12 +3.5 854,657 - BT_0687 0.17 -1.8 854,725 - BT_0687 0.21 -0.0 854,787 + BT_0687 0.25 -0.0 854,807 - BT_0687 0.26 -2.0 854,868 - BT_0687 0.30 -2.0 854,891 + BT_0687 0.32 -0.0 854,892 - BT_0687 0.32 -0.3 855,059 - BT_0687 0.42 -0.0 855,070 - BT_0687 0.43 -1.6 855,243 + BT_0687 0.53 -1.0 855,244 - BT_0687 0.53 +3.3 855,251 + BT_0687 0.54 -0.0 855,254 - BT_0687 0.54 -0.0 855,636 - BT_0687 0.77 -2.4 855,741 - BT_0687 0.84 -1.0 855,893 + -2.4 855,894 - -3.0 856,003 + -1.6 856,034 - -1.0 856,086 - -1.6 856,141 - -2.0 856,146 + -1.6 856,180 + -2.6 856,180 + -1.6 856,397 - BT0688 0.28 -2.6 856,417 + BT0688 0.31 -2.0 856,417 + BT0688 0.31 -2.4 856,479 - BT0688 0.41 -2.0 856,976 + -1.4
Or see this region's nucleotide sequence