Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0052

Experiment: L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0051 and BT0052 are separated by 170 nucleotidesBT0052 and BT0053 overlap by 1 nucleotides BT0051: BT0051 - putative glycosyltransferase (NCBI ptt file), at 46,565 to 47,545 BT0051 BT0052: BT0052 - hypothetical protein (NCBI ptt file), at 47,716 to 48,834 BT0052 BT0053: BT0053 - glycosyltransferase (NCBI ptt file), at 48,834 to 49,958 BT0053 Position (kb) 47 48 49Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 46.755 kb on + strand, within BT0051at 46.826 kb on + strand, within BT0051at 46.916 kb on - strand, within BT0051at 47.011 kb on - strand, within BT0051at 47.042 kb on + strand, within BT0051at 47.043 kb on - strand, within BT0051at 47.064 kb on - strand, within BT0051at 47.068 kb on - strand, within BT0051at 47.103 kb on + strand, within BT0051at 47.122 kb on - strand, within BT0051at 47.416 kb on + strand, within BT0051at 47.512 kb on - strandat 47.559 kb on + strandat 47.565 kb on - strandat 47.565 kb on - strandat 47.565 kb on - strandat 47.592 kb on + strandat 47.631 kb on + strandat 47.635 kb on - strandat 47.642 kb on - strandat 47.642 kb on - strandat 47.794 kb on - strandat 47.800 kb on + strandat 47.800 kb on + strandat 47.809 kb on + strandat 47.809 kb on + strandat 47.810 kb on - strandat 47.810 kb on - strandat 47.816 kb on + strandat 47.817 kb on - strandat 47.817 kb on - strandat 47.862 kb on + strand, within BT0052at 47.863 kb on - strand, within BT0052at 47.909 kb on - strand, within BT0052at 47.909 kb on - strand, within BT0052at 47.992 kb on + strand, within BT0052at 48.037 kb on + strand, within BT0052at 48.038 kb on - strand, within BT0052at 48.038 kb on - strand, within BT0052at 48.038 kb on - strand, within BT0052at 48.099 kb on - strand, within BT0052at 48.152 kb on + strand, within BT0052at 48.177 kb on + strand, within BT0052at 48.186 kb on + strand, within BT0052at 48.189 kb on + strand, within BT0052at 48.190 kb on - strand, within BT0052at 48.222 kb on - strand, within BT0052at 48.242 kb on + strand, within BT0052at 48.242 kb on + strand, within BT0052at 48.243 kb on - strand, within BT0052at 48.324 kb on + strand, within BT0052at 48.325 kb on - strand, within BT0052at 48.366 kb on + strand, within BT0052at 48.414 kb on + strand, within BT0052at 48.476 kb on + strand, within BT0052at 48.477 kb on - strand, within BT0052at 48.502 kb on + strand, within BT0052at 48.559 kb on + strand, within BT0052at 48.611 kb on + strand, within BT0052at 48.685 kb on - strand, within BT0052at 48.692 kb on + strand, within BT0052at 48.693 kb on - strand, within BT0052at 48.723 kb on - strandat 48.760 kb on + strandat 48.845 kb on - strandat 48.845 kb on - strandat 48.847 kb on - strandat 48.847 kb on - strandat 48.890 kb on - strandat 48.927 kb on + strandat 48.934 kb on + strandat 48.934 kb on + strandat 49.021 kb on - strand, within BT0053at 49.053 kb on - strand, within BT0053at 49.088 kb on + strand, within BT0053at 49.109 kb on - strand, within BT0053at 49.134 kb on - strand, within BT0053at 49.134 kb on - strand, within BT0053at 49.348 kb on - strand, within BT0053at 49.533 kb on - strand, within BT0053at 49.609 kb on + strand, within BT0053at 49.692 kb on - strand, within BT0053at 49.728 kb on - strand, within BT0053

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
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46,755 + BT0051 0.19 -2.3
46,826 + BT0051 0.27 -2.0
46,916 - BT0051 0.36 +0.6
47,011 - BT0051 0.45 -1.5
47,042 + BT0051 0.49 +0.0
47,043 - BT0051 0.49 +1.6
47,064 - BT0051 0.51 -2.5
47,068 - BT0051 0.51 -0.8
47,103 + BT0051 0.55 +0.0
47,122 - BT0051 0.57 -1.0
47,416 + BT0051 0.87 +0.0
47,512 - -1.5
47,559 + -0.4
47,565 - -1.0
47,565 - -2.3
47,565 - -1.0
47,592 + -3.4
47,631 + -1.5
47,635 - -1.8
47,642 - -1.0
47,642 - +0.0
47,794 - -2.8
47,800 + -1.0
47,800 + -1.5
47,809 + -3.7
47,809 + -2.0
47,810 - +0.0
47,810 - -1.5
47,816 + -1.0
47,817 - +0.0
47,817 - -1.5
47,862 + BT0052 0.13 -4.7
47,863 - BT0052 0.13 +0.0
47,909 - BT0052 0.17 -2.0
47,909 - BT0052 0.17 -1.1
47,992 + BT0052 0.25 -0.2
48,037 + BT0052 0.29 -1.5
48,038 - BT0052 0.29 +2.4
48,038 - BT0052 0.29 -3.1
48,038 - BT0052 0.29 -2.3
48,099 - BT0052 0.34 -2.0
48,152 + BT0052 0.39 -3.1
48,177 + BT0052 0.41 +0.6
48,186 + BT0052 0.42 -3.5
48,189 + BT0052 0.42 -2.8
48,190 - BT0052 0.42 -3.4
48,222 - BT0052 0.45 +0.0
48,242 + BT0052 0.47 -3.1
48,242 + BT0052 0.47 +0.0
48,243 - BT0052 0.47 -2.0
48,324 + BT0052 0.54 -1.5
48,325 - BT0052 0.54 -1.1
48,366 + BT0052 0.58 -1.5
48,414 + BT0052 0.62 -1.5
48,476 + BT0052 0.68 +0.0
48,477 - BT0052 0.68 +1.4
48,502 + BT0052 0.70 -1.0
48,559 + BT0052 0.75 -2.0
48,611 + BT0052 0.80 -2.0
48,685 - BT0052 0.87 -1.0
48,692 + BT0052 0.87 -1.5
48,693 - BT0052 0.87 -1.5
48,723 - -2.8
48,760 + -1.5
48,845 - -1.4
48,845 - -3.9
48,847 - -1.0
48,847 - -2.3
48,890 - -2.0
48,927 + -2.0
48,934 + -0.3
48,934 + +0.0
49,021 - BT0053 0.17 -1.0
49,053 - BT0053 0.19 +0.4
49,088 + BT0053 0.23 -2.8
49,109 - BT0053 0.24 -1.4
49,134 - BT0053 0.27 -2.1
49,134 - BT0053 0.27 -1.5
49,348 - BT0053 0.46 +0.8
49,533 - BT0053 0.62 -1.7
49,609 + BT0053 0.69 +0.0
49,692 - BT0053 0.76 -1.2
49,728 - BT0053 0.79 +0.0

Or see this region's nucleotide sequence