Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around p5482_28

Experiment: L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
22,405	-				-1.9
22,474	-		p5482_27	0.12	-0.5
22,537	+		p5482_27	0.18	-2.0
22,567	+		p5482_27	0.21	-1.4
22,568	-		p5482_27	0.21	-1.0
22,568	-		p5482_27	0.21	-3.5
22,611	+		p5482_27	0.25	-0.7
22,611	+		p5482_27	0.25	-2.9
22,652	+		p5482_27	0.29	-2.1
22,652	+		p5482_27	0.29	+0.5
22,652	+		p5482_27	0.29	-1.0
22,653	-		p5482_27	0.29	-1.1
22,653	-		p5482_27	0.29	-1.5
22,653	-		p5482_27	0.29	-1.9
22,653	-		p5482_27	0.29	-1.5
22,659	-		p5482_27	0.30	-2.5
22,659	-		p5482_27	0.30	-3.4
22,698	-		p5482_27	0.33	-4.0
22,699	+		p5482_27	0.34	-3.1
22,700	-		p5482_27	0.34	-3.7
22,745	-		p5482_27	0.38	-1.8
22,762	+		p5482_27	0.39	-5.5
22,762	+		p5482_27	0.39	-1.1
22,762	+		p5482_27	0.39	-1.1
22,763	-		p5482_27	0.40	-1.9
22,769	+				-4.6
22,769	+		p5482_27	0.40	-4.2
22,769	+		p5482_27	0.40	-2.1
22,769	+		p5482_27	0.40	-2.5
22,769	+		p5482_27	0.40	-0.5
22,769	+		p5482_27	0.40	-2.2
22,770	-		p5482_27	0.40	-2.1
22,770	-		p5482_27	0.40	-1.1
22,770	-		p5482_27	0.40	-2.1
22,773	+		p5482_27	0.40	-2.9
22,774	-		p5482_27	0.41	-1.5
22,774	-		p5482_27	0.41	-1.5
22,774	-		p5482_27	0.41	-0.4
22,774	-		p5482_27	0.41	-0.6
22,774	-		p5482_27	0.41	-2.9
22,774	-		p5482_27	0.41	-1.8
22,780	+		p5482_27	0.41	-0.5
22,780	+		p5482_27	0.41	-1.9
22,780	+		p5482_27	0.41	-2.5
22,780	+		p5482_27	0.41	-0.2
22,781	-		p5482_27	0.41	-2.1
22,844	+		p5482_27	0.47	+2.2
22,844	+		p5482_27	0.47	-2.4
22,844	+		p5482_27	0.47	-2.0
22,872	-		p5482_27	0.50	-1.8
22,872	-		p5482_27	0.50	-1.6
22,872	-		p5482_27	0.50	-3.0
22,896	+		p5482_27	0.52	-2.5
22,896	+		p5482_27	0.52	-0.5
22,897	-		p5482_27	0.52	-4.8
22,897	-		p5482_27	0.52	-1.3
22,897	-		p5482_27	0.52	-2.1
22,949	+		p5482_27	0.57	-0.5
22,949	+		p5482_27	0.57	-0.1
22,949	+		p5482_27	0.57	+0.7
22,949	+		p5482_27	0.57	-3.5
22,949	+		p5482_27	0.57	-3.4
22,949	+		p5482_27	0.57	-2.1
22,949	+		p5482_27	0.57	-2.5
22,949	+		p5482_27	0.57	+0.2
22,949	+		p5482_27	0.57	+1.1
22,949	+		p5482_27	0.57	-1.5
22,950	-		p5482_27	0.57	-1.7
22,950	-		p5482_27	0.57	-1.8
22,950	-		p5482_27	0.57	-3.1
22,950	-		p5482_27	0.57	-0.8
22,950	-		p5482_27	0.57	-0.7
22,950	-		p5482_27	0.57	-2.5
22,950	-		p5482_27	0.57	-1.4
22,979	-		p5482_27	0.60	-2.9
22,983	-		p5482_27	0.60	-1.0
22,983	-		p5482_27	0.60	-1.7
22,983	-		p5482_27	0.60	-2.1
22,983	-		p5482_27	0.60	-1.1
22,994	+		p5482_27	0.61	-4.9
23,075	+		p5482_27	0.69	+2.0
23,075	+		p5482_27	0.69	-0.8
23,076	-		p5482_27	0.69	-1.6
23,086	-		p5482_27	0.70	-0.7
23,093	+		p5482_27	0.71	-1.0
23,094	-		p5482_27	0.71	-1.6
23,120	+		p5482_27	0.73	-1.3
23,120	+		p5482_27	0.73	-3.4
23,121	-		p5482_27	0.73	-1.7
23,121	-		p5482_27	0.73	-0.5
23,156	-		p5482_27	0.77	-1.9
23,165	+		p5482_27	0.77	-2.1
23,165	+		p5482_27	0.77	-2.9
23,166	-		p5482_27	0.77	-1.7
23,183	+		p5482_27	0.79	-1.5
23,243	+		p5482_27	0.85	+2.2
23,243	+		p5482_27	0.85	-1.5
23,258	+		p5482_27	0.86	-2.1
23,258	+		p5482_27	0.86	-1.5
23,263	+		p5482_27	0.87	+0.5
23,263	+		p5482_27	0.87	-2.1
23,264	-		p5482_27	0.87	-1.9
23,264	-		p5482_27	0.87	-1.5
23,264	-		p5482_27	0.87	-2.3
23,267	+		p5482_27	0.87	+2.3
23,267	+		p5482_27	0.87	-3.4
23,267	+		p5482_27	0.87	+3.0
23,267	+		p5482_27	0.87	+1.3
23,267	+		p5482_27	0.87	-5.2
23,268	-		p5482_27	0.87	-2.6
23,268	-		p5482_27	0.87	-2.5
23,268	-		p5482_27	0.87	-2.1
23,268	-		p5482_27	0.87	-1.3
23,288	+		p5482_27	0.89	-3.4
23,288	+		p5482_27	0.89	-1.2
23,288	+		p5482_27	0.89	-1.6
23,288	+		p5482_27	0.89	+0.1
23,288	+		p5482_27	0.89	-3.1
23,289	-		p5482_27	0.89	-0.9
23,289	-		p5482_27	0.89	-0.3
23,289	-		p5482_27	0.89	-2.5
23,289	-		p5482_27	0.89	-0.5
23,352	+				-0.5
23,405	+				+0.0
23,405	+				+5.3
23,412	-				-1.5
23,419	-				-1.5
23,433	-				+0.2
23,466	+		p5482_28	0.12	-1.5
23,474	+		p5482_28	0.12	-2.1
23,475	-		p5482_28	0.13	-2.5
23,479	+		p5482_28	0.13	-1.9
23,480	-		p5482_28	0.13	-1.1
23,480	-		p5482_28	0.13	-1.5
23,511	-		p5482_28	0.16	+0.4
23,568	-		p5482_28	0.22	-2.1
23,568	-		p5482_28	0.22	-1.3
23,568	-		p5482_28	0.22	-0.5
23,568	-		p5482_28	0.22	-2.0
23,573	-		p5482_28	0.23	-1.1
23,603	+		p5482_28	0.26	-0.5
23,604	-		p5482_28	0.26	-1.7
23,604	-		p5482_28	0.26	-2.9
23,678	-		p5482_28	0.34	-0.5
23,716	+		p5482_28	0.37	-4.0
23,717	-		p5482_28	0.38	-1.1
23,717	-		p5482_28	0.38	-3.9
23,806	-		p5482_28	0.47	-0.5
23,806	-		p5482_28	0.47	-0.5
23,806	-		p5482_28	0.47	+0.7
23,806	-		p5482_28	0.47	-1.3
23,806	-		p5482_28	0.47	-1.2
23,806	-		p5482_28	0.47	-1.5
23,806	-		p5482_28	0.47	-2.5
23,807	+		p5482_28	0.47	-3.4
23,808	-		p5482_28	0.47	+0.7
23,808	-		p5482_28	0.47	-0.8
23,852	+		p5482_28	0.51	-3.5
23,852	+		p5482_28	0.51	-0.5
23,853	-		p5482_28	0.52	-2.5
23,856	-		p5482_28	0.52	-2.3
23,856	-		p5482_28	0.52	-0.5
23,862	-		p5482_28	0.53	-1.5
23,862	-		p5482_28	0.53	-2.1
23,879	+		p5482_28	0.54	-5.1
23,888	-		p5482_28	0.55	-2.6
23,888	-		p5482_28	0.55	-0.3
23,888	-		p5482_28	0.55	-2.9
23,894	-		p5482_28	0.56	-3.1
23,894	-		p5482_28	0.56	-1.5
23,894	-		p5482_28	0.56	-3.2
23,894	-		p5482_28	0.56	-2.5
23,894	-		p5482_28	0.56	+1.7
23,894	-		p5482_28	0.56	-1.7
23,971	-		p5482_28	0.64	-3.1
23,971	-		p5482_28	0.64	-0.9
24,048	+		p5482_28	0.72	-1.7
24,048	+		p5482_28	0.72	-4.8
24,049	-		p5482_28	0.72	-2.8
24,049	-		p5482_28	0.72	-2.5
24,051	-		p5482_28	0.72	-1.5
24,051	-		p5482_28	0.72	-1.5
24,061	+		p5482_28	0.73	-2.0
24,062	-		p5482_28	0.73	-2.1
24,063	+		p5482_28	0.73	-2.5
24,064	-		p5482_28	0.73	-2.5
24,064	-		p5482_28	0.73	-3.7
24,113	-		p5482_28	0.78	-2.9
24,113	-		p5482_28	0.78	-1.5
24,139	+		p5482_28	0.81	-2.4
24,143	+		p5482_28	0.82	-0.5
24,143	+		p5482_28	0.82	-3.1
24,196	-		p5482_28	0.87	-2.0
24,229	+				-2.5
24,229	+				-1.5
24,230	-				-3.1
24,230	-				-3.1
24,236	+				-3.7
24,311	+				+4.0
24,312	-				-2.9
24,312	-				-0.1
24,312	-				-2.3
24,312	-				-1.5
24,312	-				-0.9
24,376	+				-0.5
24,381	+				+0.5
24,381	+				-2.5
24,382	-				-3.4
24,382	-				-2.5
24,405	+				-0.5
24,405	+				+0.3
24,405	+				-2.4
24,408	+				-3.4
24,409	-				-1.5
24,409	-				-0.5
24,476	-				-1.5
24,483	+		p5482_29	0.11	-3.7
24,484	-		p5482_29	0.11	-0.8
24,487	+		p5482_29	0.11	-3.8
24,487	+		p5482_29	0.11	-1.0
24,487	+		p5482_29	0.11	-1.3
24,487	+		p5482_29	0.11	-0.1
24,488	-		p5482_29	0.11	-0.5
24,488	-		p5482_29	0.11	-0.8
24,508	+		p5482_29	0.13	-1.0
24,514	+		p5482_29	0.13	-2.4
24,514	+		p5482_29	0.13	-0.8
24,515	-		p5482_29	0.13	-1.5
24,517	+		p5482_29	0.14	-1.0
24,518	-		p5482_29	0.14	-3.7
24,575	-		p5482_29	0.19	-1.5
24,575	-		p5482_29	0.19	-4.0
24,575	-		p5482_29	0.19	-1.5
24,653	+		p5482_29	0.26	-1.3
24,653	+		p5482_29	0.26	-1.5
24,654	-		p5482_29	0.26	-1.9
24,704	+		p5482_29	0.30	-1.6
24,728	-		p5482_29	0.32	-2.3
24,749	+		p5482_29	0.34	-3.1
24,749	+		p5482_29	0.34	-3.1
24,750	-		p5482_29	0.34	+1.0
24,751	+		p5482_29	0.34	-0.5
24,751	+		p5482_29	0.34	-0.8
24,783	+		p5482_29	0.37	-1.1
24,784	-		p5482_29	0.37	+1.0
24,784	-		p5482_29	0.37	-1.5
24,788	+		p5482_29	0.38	-0.5
24,788	+		p5482_29	0.38	-2.0
24,789	-		p5482_29	0.38	-1.9
24,789	-		p5482_29	0.38	+0.7
24,789	-		p5482_29	0.38	-0.4
24,789	-		p5482_29	0.38	+0.0
24,790	+		p5482_29	0.38	-1.4
24,790	+		p5482_29	0.38	-0.9
24,790	+		p5482_29	0.38	-2.1
24,790	+		p5482_29	0.38	-0.6
24,791	-		p5482_29	0.38	+0.3
24,791	-		p5482_29	0.38	-2.5
24,806	+		p5482_29	0.39	-1.5
24,818	-		p5482_29	0.40	-1.7
24,820	+		p5482_29	0.41	-1.0
24,820	+		p5482_29	0.41	-2.1
24,820	+		p5482_29	0.41	-2.1
24,821	-		p5482_29	0.41	-2.1
24,821	-		p5482_29	0.41	-2.2
24,833	+		p5482_29	0.42	-1.5
24,834	-		p5482_29	0.42	-1.2
24,845	+		p5482_29	0.43	-1.5
24,845	+		p5482_29	0.43	-3.4
24,845	+		p5482_29	0.43	-3.6
24,845	+		p5482_29	0.43	-3.9
24,846	-		p5482_29	0.43	-1.7
24,846	-		p5482_29	0.43	-2.1
24,846	-		p5482_29	0.43	-0.5
24,846	-		p5482_29	0.43	-1.5
24,846	-		p5482_29	0.43	-1.7
24,898	+		p5482_29	0.48	-2.5
24,910	+		p5482_29	0.49	-1.5
24,911	-		p5482_29	0.49	-4.6
24,911	-		p5482_29	0.49	+0.1
24,911	-		p5482_29	0.49	-1.3
24,928	-		p5482_29	0.50	-0.6
24,928	-		p5482_29	0.50	-1.4
24,948	-		p5482_29	0.52	-3.1
24,948	-		p5482_29	0.52	-0.8
24,952	+		p5482_29	0.52	-0.5
25,081	+		p5482_29	0.64	-3.1
25,081	+		p5482_29	0.64	-2.9
25,081	+		p5482_29	0.64	-1.0
25,082	-		p5482_29	0.64	+1.6
25,114	+		p5482_29	0.67	-0.6
25,114	+				-3.9
25,114	+		p5482_29	0.67	-1.5
25,115	-		p5482_29	0.67	+0.8
25,115	-		p5482_29	0.67	-2.5
25,115	-		p5482_29	0.67	-0.8
25,129	+		p5482_29	0.68	-0.6
25,136	-		p5482_29	0.69	-1.5
25,138	+		p5482_29	0.69	-3.6
25,139	-		p5482_29	0.69	-0.9
25,139	-		p5482_29	0.69	+0.0
25,139	-		p5482_29	0.69	-0.2
25,139	-		p5482_29	0.69	-1.0
25,139	-		p5482_29	0.69	-1.0
25,147	+		p5482_29	0.70	-3.1
25,147	+		p5482_29	0.70	-2.8
25,147	+		p5482_29	0.70	+0.5
25,147	+		p5482_29	0.70	-1.1
25,148	-		p5482_29	0.70	-1.8
25,148	-		p5482_29	0.70	-2.9
25,148	-		p5482_29	0.70	-0.9
25,148	-		p5482_29	0.70	-1.2
25,148	-		p5482_29	0.70	-0.1
25,148	-		p5482_29	0.70	-0.7
25,154	-		p5482_29	0.70	-3.9
25,162	+		p5482_29	0.71	-3.1
25,163	-		p5482_29	0.71	-0.5
25,163	-		p5482_29	0.71	-0.1
25,164	+		p5482_29	0.71	-1.2
25,164	+		p5482_29	0.71	-2.5
25,165	-		p5482_29	0.71	+0.0
25,165	-		p5482_29	0.71	-1.2
25,283	+		p5482_29	0.82	-1.4
25,283	+		p5482_29	0.82	-1.7
25,319	+		p5482_29	0.85	-1.5
25,319	+		p5482_29	0.85	-2.3
25,319	+		p5482_29	0.85	+1.6
25,320	-		p5482_29	0.85	-3.9
25,320	-		p5482_29	0.85	-1.9