Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2919

Experiment: L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
3,659,884	+		BT2918	0.21	-1.9
3,659,929	+		BT2918	0.25	+0.9
3,660,024	-		BT2918	0.33	-2.1
3,660,066	-		BT2918	0.36	-0.1
3,660,129	+		BT2918	0.42	-1.1
3,660,207	+		BT2918	0.48	-4.6
3,660,207	+		BT2918	0.48	+0.4
3,660,208	-		BT2918	0.48	-1.6
3,660,262	+		BT2918	0.53	+0.9
3,660,266	-		BT2918	0.53	-1.8
3,660,266	-		BT2918	0.53	-2.4
3,660,313	+		BT2918	0.57	-1.6
3,660,315	+		BT2918	0.57	-2.6
3,660,315	+		BT2918	0.57	-0.4
3,660,322	+		BT2918	0.57	+0.7
3,660,322	+		BT2918	0.57	-1.7
3,660,322	+		BT2918	0.57	-2.4
3,660,322	+		BT2918	0.57	-1.0
3,660,322	+		BT2918	0.57	-1.6
3,660,323	-		BT2918	0.58	-3.7
3,660,324	+		BT2918	0.58	-0.9
3,660,325	-		BT2918	0.58	-2.6
3,660,325	-		BT2918	0.58	-0.8
3,660,325	-		BT2918	0.58	-3.5
3,660,325	-		BT2918	0.58	-2.3
3,660,326	+		BT2918	0.58	-1.6
3,660,326	+		BT2918	0.58	-1.1
3,660,326	+		BT2918	0.58	+0.4
3,660,469	+		BT2918	0.70	-1.1
3,660,528	+		BT2918	0.74	-1.1
3,660,602	-		BT2918	0.80	-2.1
3,660,620	-		BT2918	0.82	-3.5
3,660,640	+		BT2918	0.84	-0.3
3,660,646	-		BT2918	0.84	+1.5
3,660,675	+		BT2918	0.87	-0.1
3,660,676	-		BT2918	0.87	-1.6
3,660,707	+		BT2918	0.89	-1.2
3,660,743	-				-1.1
3,660,773	-				-1.5
3,660,803	-				-2.9
3,660,804	+				-0.4
3,660,816	+				+0.5
3,660,820	+				-0.3
3,660,820	+				-1.3
3,660,821	-				+0.9
3,660,897	+				-2.2
3,660,905	+				-2.6
3,660,909	+				-3.4
3,660,933	+				-1.8
3,660,968	+				-2.9
3,660,970	+				-2.1
3,660,986	+				-2.4
3,660,989	+				-1.6
3,660,989	+				-2.1
3,661,011	-				-4.1
3,661,013	+				-1.6
3,661,013	+				-3.0
3,661,020	-				-1.6
3,661,109	+		BT2919	0.13	-2.1
3,661,156	+		BT2919	0.15	-1.0
3,661,156	+		BT2919	0.15	-1.5
3,661,156	+		BT2919	0.15	-2.8
3,661,176	+		BT2919	0.17	-0.6
3,661,267	+		BT2919	0.21	-2.6
3,661,267	+		BT2919	0.21	-1.1
3,661,277	-		BT2919	0.22	-0.2
3,661,309	+		BT2919	0.23	-2.9
3,661,313	+		BT2919	0.24	-2.6
3,661,313	+		BT2919	0.24	-1.1
3,661,362	+		BT2919	0.26	-3.1
3,661,363	-		BT2919	0.26	-2.4
3,661,377	+		BT2919	0.27	-3.5
3,661,377	+		BT2919	0.27	-0.8
3,661,379	+		BT2919	0.27	-0.6
3,661,380	-		BT2919	0.27	-0.9
3,661,433	+		BT2919	0.30	-1.1
3,661,433	+		BT2919	0.30	-1.3
3,661,433	+		BT2919	0.30	-2.4
3,661,433	+		BT2919	0.30	-0.1
3,661,434	-		BT2919	0.30	-0.6
3,661,440	+		BT2919	0.30	-2.5
3,661,441	-		BT2919	0.30	-1.1
3,661,445	-		BT2919	0.31	-1.7
3,661,516	+		BT2919	0.34	-2.1
3,661,553	+		BT2919	0.36	-2.4
3,661,553	+		BT2919	0.36	-1.6
3,661,553	+		BT2919	0.36	-0.1
3,661,553	+		BT2919	0.36	-2.1
3,661,554	-		BT2919	0.36	+0.7
3,661,554	-		BT2919	0.36	-1.6
3,661,569	-		BT2919	0.37	+0.7
3,661,573	+		BT2919	0.37	-2.1
3,661,577	+		BT2919	0.37	-0.7
3,661,618	+		BT2919	0.40	-1.6
3,661,618	+		BT2919	0.40	-1.6
3,661,618	+		BT2919	0.40	-1.0
3,661,618	+		BT2919	0.40	-2.1
3,661,830	-		BT2919	0.51	-3.4
3,661,868	+		BT2919	0.53	+3.7
3,661,887	-		BT2919	0.54	-4.1
3,661,887	-		BT2919	0.54	-0.1
3,661,887	-		BT2919	0.54	-0.3
3,661,888	+		BT2919	0.54	-1.1
3,661,889	-		BT2919	0.54	-2.3
3,661,957	-		BT2919	0.57	-1.5
3,662,051	+		BT2919	0.62	-0.6
3,662,091	+		BT2919	0.64	+0.5
3,662,093	+		BT2919	0.64	-2.9
3,662,115	-		BT2919	0.65	-1.6
3,662,150	+		BT2919	0.67	-0.1
3,662,192	+		BT2919	0.69	+0.9
3,662,201	-		BT2919	0.70	-1.1
3,662,217	+		BT2919	0.71	-1.1
3,662,217	+		BT2919	0.71	-1.6
3,662,268	-		BT2919	0.73	-1.1
3,662,296	+		BT2919	0.75	-1.6
3,662,296	+		BT2919	0.75	+1.8
3,662,315	-		BT2919	0.76	-0.1
3,662,320	+		BT2919	0.76	-0.5
3,662,320	+		BT2919	0.76	-1.6
3,662,324	-		BT2919	0.76	-0.1
3,662,324	-		BT2919	0.76	-1.7
3,662,324	-		BT2919	0.76	-3.1
3,662,434	+		BT2919	0.82	-0.8
3,662,507	+		BT2919	0.86	-3.1
3,662,508	-		BT2919	0.86	-0.1
3,662,508	-		BT2919	0.86	-2.6
3,662,558	+		BT2919	0.88	+0.1
3,662,562	-		BT2919	0.89	-2.9
3,662,564	-		BT2919	0.89	-0.1
3,662,604	+				+0.9
3,662,605	-				-2.6
3,662,626	+				-1.5
3,662,637	-				-1.6
3,662,794	+				-1.6
3,662,819	+				-2.5
3,662,821	+				-0.1
3,662,840	-				-3.0
3,662,948	+				-1.6
3,662,953	-				-0.1
3,662,953	-				-2.1
3,662,969	+				-2.9
3,662,969	+				-3.5
3,663,035	+				-1.5
3,663,041	+				-1.1
3,663,063	+				-2.4
3,663,093	-				-1.3
3,663,093	-				-0.5
3,663,096	-				-2.6
3,663,140	+		BT2920	0.11	+0.5
3,663,160	-		BT2920	0.11	-1.1
3,663,160	-		BT2920	0.11	-2.6
3,663,183	-		BT2920	0.12	+0.5
3,663,252	+		BT2920	0.14	-2.1
3,663,252	+		BT2920	0.14	-0.7
3,663,252	+		BT2920	0.14	-1.1
3,663,252	+		BT2920	0.14	-3.8
3,663,252	+		BT2920	0.14	-2.6
3,663,253	-		BT2920	0.14	-3.5
3,663,255	-		BT2920	0.14	-0.1
3,663,268	+		BT2920	0.15	-0.1
3,663,294	+		BT2920	0.16	-2.2
3,663,363	+		BT2920	0.18	-1.6
3,663,409	-		BT2920	0.19	-2.6
3,663,419	+		BT2920	0.20	-1.1
3,663,438	+		BT2920	0.20	-1.8
3,663,458	+		BT2920	0.21	-1.6
3,663,458	+		BT2920	0.21	-2.8
3,663,460	+		BT2920	0.21	-0.9
3,663,460	+		BT2920	0.21	-1.1
3,663,461	-		BT2920	0.21	+0.9
3,663,485	-		BT2920	0.22	-0.3
3,663,523	+		BT2920	0.23	-1.1
3,663,539	+		BT2920	0.23	+1.2
3,663,541	+		BT2920	0.23	-2.4
3,663,542	-		BT2920	0.23	-2.4
3,663,557	-		BT2920	0.24	-1.6
3,663,561	-		BT2920	0.24	-1.6
3,663,605	+		BT2920	0.25	-1.4
3,663,608	+		BT2920	0.26	-0.7
3,663,641	+		BT2920	0.27	-2.4
3,663,683	+		BT2920	0.28	-1.2
3,663,695	+		BT2920	0.28	-4.5
3,663,735	-		BT2920	0.29	-0.6
3,663,736	+		BT2920	0.30	-0.9