Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1673

Experiment: L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT1672 and BT1673 are separated by 205 nucleotidesBT1673 and BT1674 are separated by 11 nucleotides BT1672: BT1672 - phosphoglycerate kinase (NCBI ptt file), at 2,064,359 to 2,065,618 BT1672 BT1673: BT1673 - thiamine biosynthesis protein, putative (NCBI ptt file), at 2,065,824 to 2,066,678 BT1673 BT1674: BT1674 - hypothetical protein (NCBI ptt file), at 2,066,690 to 2,067,733 BT1674 Position (kb) 2065 2066 2067Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2065.625 kb on + strandat 2065.645 kb on + strandat 2065.679 kb on + strandat 2065.679 kb on + strandat 2065.683 kb on + strandat 2065.683 kb on + strandat 2065.683 kb on + strandat 2065.685 kb on + strandat 2065.686 kb on - strandat 2065.702 kb on - strandat 2065.726 kb on + strandat 2065.727 kb on - strandat 2065.752 kb on + strandat 2065.753 kb on - strandat 2065.788 kb on - strandat 2065.789 kb on + strandat 2065.805 kb on - strandat 2065.862 kb on + strandat 2065.862 kb on + strandat 2065.863 kb on - strandat 2065.999 kb on + strand, within BT1673at 2066.244 kb on + strand, within BT1673at 2066.245 kb on - strand, within BT1673at 2066.436 kb on + strand, within BT1673at 2066.436 kb on + strand, within BT1673at 2066.474 kb on - strand, within BT1673at 2066.474 kb on - strand, within BT1673at 2066.575 kb on + strand, within BT1673at 2066.613 kb on + strandat 2066.613 kb on + strandat 2066.640 kb on - strandat 2066.640 kb on - strandat 2066.640 kb on - strandat 2066.666 kb on + strandat 2066.669 kb on + strandat 2066.749 kb on + strandat 2066.787 kb on + strandat 2066.788 kb on - strandat 2066.842 kb on + strand, within BT1674at 2066.842 kb on + strand, within BT1674at 2066.946 kb on - strand, within BT1674at 2066.966 kb on - strand, within BT1674at 2066.984 kb on - strand, within BT1674at 2067.020 kb on - strand, within BT1674at 2067.044 kb on - strand, within BT1674at 2067.093 kb on - strand, within BT1674at 2067.172 kb on + strand, within BT1674at 2067.173 kb on - strand, within BT1674at 2067.355 kb on - strand, within BT1674at 2067.431 kb on - strand, within BT1674at 2067.433 kb on + strand, within BT1674at 2067.620 kb on + strand, within BT1674

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
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2,065,625 + -0.3
2,065,645 + -2.8
2,065,679 + -4.5
2,065,679 + -0.6
2,065,683 + -0.6
2,065,683 + -1.4
2,065,683 + -3.6
2,065,685 + -1.8
2,065,686 - +1.0
2,065,702 - +1.0
2,065,726 + -0.0
2,065,727 - +0.2
2,065,752 + -0.0
2,065,753 - -2.3
2,065,788 - -0.0
2,065,789 + -2.0
2,065,805 - -2.6
2,065,862 + -0.5
2,065,862 + -1.0
2,065,863 - -3.5
2,065,999 + BT1673 0.20 -1.0
2,066,244 + BT1673 0.49 -1.0
2,066,245 - BT1673 0.49 +2.2
2,066,436 + BT1673 0.72 -0.0
2,066,436 + BT1673 0.72 -0.4
2,066,474 - BT1673 0.76 +0.4
2,066,474 - BT1673 0.76 -0.0
2,066,575 + BT1673 0.88 -1.2
2,066,613 + +0.6
2,066,613 + -2.0
2,066,640 - -1.5
2,066,640 - -3.3
2,066,640 - -1.0
2,066,666 + +1.3
2,066,669 + +0.6
2,066,749 + -1.7
2,066,787 + -2.8
2,066,788 - -1.6
2,066,842 + BT1674 0.15 -3.3
2,066,842 + BT1674 0.15 -4.2
2,066,946 - BT1674 0.25 +0.4
2,066,966 - BT1674 0.26 +0.3
2,066,984 - BT1674 0.28 +0.0
2,067,020 - BT1674 0.32 -0.9
2,067,044 - BT1674 0.34 +0.4
2,067,093 - BT1674 0.39 -1.0
2,067,172 + BT1674 0.46 +0.0
2,067,173 - BT1674 0.46 +1.0
2,067,355 - BT1674 0.64 -2.0
2,067,431 - BT1674 0.71 -1.2
2,067,433 + BT1674 0.71 -1.6
2,067,620 + BT1674 0.89 +0.0

Or see this region's nucleotide sequence