Experiment: L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0754 and BT0755 are separated by 29 nucleotides BT0755 and BT0756 are separated by 127 nucleotides
BT0754: BT0754 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 936,269 to 939,685
BT0754
BT0755: BT0755 - hypothetical protein (NCBI ptt file), at 939,715 to 941,520
BT0755
BT0756: BT0756 - iduronate 2-sulfatase precursor (NCBI ptt file), at 941,648 to 943,042
BT0756
Position (kb) 939
940
941
942 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 938.723 kb on - strand, within BT0754 at 938.723 kb on - strand, within BT0754 at 938.873 kb on + strand, within BT0754 at 938.894 kb on - strand, within BT0754 at 938.988 kb on - strand, within BT0754 at 938.988 kb on - strand, within BT0754 at 939.088 kb on + strand, within BT0754 at 939.118 kb on + strand, within BT0754 at 939.121 kb on + strand, within BT0754 at 939.133 kb on + strand, within BT0754 at 939.306 kb on - strand, within BT0754 at 939.372 kb on - strand at 939.425 kb on - strand at 939.563 kb on - strand at 939.644 kb on + strand at 939.645 kb on - strand at 939.729 kb on - strand at 939.839 kb on - strand at 939.873 kb on + strand at 939.878 kb on + strand at 939.895 kb on + strand at 940.031 kb on - strand, within BT0755 at 940.174 kb on - strand, within BT0755 at 940.541 kb on - strand, within BT0755 at 940.600 kb on - strand, within BT0755 at 940.631 kb on - strand, within BT0755 at 940.659 kb on + strand, within BT0755 at 940.739 kb on + strand, within BT0755 at 940.740 kb on - strand, within BT0755 at 940.750 kb on + strand, within BT0755 at 940.753 kb on - strand, within BT0755 at 940.758 kb on - strand, within BT0755 at 940.796 kb on - strand, within BT0755 at 940.839 kb on + strand, within BT0755 at 940.840 kb on - strand, within BT0755 at 940.986 kb on + strand, within BT0755 at 940.987 kb on - strand, within BT0755 at 940.987 kb on - strand, within BT0755 at 940.998 kb on - strand, within BT0755 at 941.002 kb on - strand, within BT0755 at 941.154 kb on - strand, within BT0755 at 941.235 kb on - strand, within BT0755 at 941.311 kb on + strand, within BT0755 at 941.337 kb on - strand, within BT0755 at 941.338 kb on + strand, within BT0755 at 941.338 kb on + strand, within BT0755 at 941.407 kb on + strand at 941.444 kb on - strand at 941.444 kb on - strand at 941.444 kb on - strand at 941.647 kb on + strand at 941.819 kb on + strand, within BT0756 at 942.087 kb on - strand, within BT0756 at 942.412 kb on - strand, within BT0756 at 942.420 kb on - strand, within BT0756 at 942.420 kb on - strand, within BT0756
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen remove 938,723 - BT0754 0.72 -0.6 938,723 - BT0754 0.72 +0.0 938,873 + BT0754 0.76 -0.8 938,894 - BT0754 0.77 -1.0 938,988 - BT0754 0.80 -0.6 938,988 - BT0754 0.80 -2.6 939,088 + BT0754 0.82 -1.0 939,118 + BT0754 0.83 +0.0 939,121 + BT0754 0.83 -0.6 939,133 + BT0754 0.84 -0.3 939,306 - BT0754 0.89 +1.0 939,372 - -0.4 939,425 - +0.7 939,563 - -1.0 939,644 + -1.0 939,645 - +0.0 939,729 - -1.6 939,839 - -1.6 939,873 + -1.0 939,878 + -2.0 939,895 + -1.6 940,031 - BT0755 0.17 -1.6 940,174 - BT0755 0.25 -1.6 940,541 - BT0755 0.46 -0.4 940,600 - BT0755 0.49 -2.0 940,631 - BT0755 0.51 -1.0 940,659 + BT0755 0.52 +0.9 940,739 + BT0755 0.57 +0.0 940,740 - BT0755 0.57 +1.1 940,750 + BT0755 0.57 +2.3 940,753 - BT0755 0.57 -2.0 940,758 - BT0755 0.58 -4.1 940,796 - BT0755 0.60 -1.0 940,839 + BT0755 0.62 +0.4 940,840 - BT0755 0.62 -1.6 940,986 + BT0755 0.70 -2.0 940,987 - BT0755 0.70 +0.0 940,987 - BT0755 0.70 -2.3 940,998 - BT0755 0.71 +0.0 941,002 - BT0755 0.71 -2.3 941,154 - BT0755 0.80 -0.4 941,235 - BT0755 0.84 -1.0 941,311 + BT0755 0.88 -1.0 941,337 - BT0755 0.90 +1.8 941,338 + BT0755 0.90 -1.6 941,338 + BT0755 0.90 +0.0 941,407 + +0.0 941,444 - -1.0 941,444 - -1.6 941,444 - -2.6 941,647 + +1.2 941,819 + BT0756 0.12 +0.0 942,087 - BT0756 0.31 +1.0 942,412 - BT0756 0.55 -2.6 942,420 - BT0756 0.55 -2.0 942,420 - BT0756 0.55 -1.0
Or see this region's nucleotide sequence