Experiment: L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0397 and BT0398 are separated by 41 nucleotides BT0398 and BT0399 are separated by 12 nucleotides BT0399 and BT0400 are separated by 14 nucleotides
BT0397: BT0397 - conserved hypothetical protein (NCBI ptt file), at 486,123 to 486,569
BT0397
BT0398: BT0398 - polysaccharide export outer membrane protein (NCBI ptt file), at 486,611 to 487,405
BT0398
BT0399: BT0399 - tyrosine-protein kinase ptk involved in exopolysaccharide biosynthesis (NCBI ptt file), at 487,418 to 488,563
BT0399
BT0400: BT0400 - putative tyrosine-protein kinase in capsular polysaccharide biosynthesis region (NCBI ptt file), at 488,578 to 489,867
BT0400
Position (kb) 487
488
489 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 486.463 kb on + strand, within BT0397 at 486.534 kb on + strand at 486.693 kb on - strand, within BT0398 at 486.693 kb on - strand, within BT0398 at 486.714 kb on + strand, within BT0398 at 486.717 kb on + strand, within BT0398 at 486.720 kb on - strand, within BT0398 at 486.784 kb on - strand, within BT0398 at 486.793 kb on + strand, within BT0398 at 486.836 kb on - strand, within BT0398 at 486.847 kb on + strand, within BT0398 at 486.891 kb on - strand, within BT0398 at 487.015 kb on - strand, within BT0398 at 487.142 kb on - strand, within BT0398 at 487.150 kb on - strand, within BT0398 at 487.171 kb on + strand, within BT0398 at 487.283 kb on + strand, within BT0398 at 487.283 kb on + strand, within BT0398 at 487.399 kb on - strand at 487.497 kb on - strand at 487.519 kb on + strand at 487.537 kb on - strand, within BT0399 at 487.661 kb on - strand, within BT0399 at 487.771 kb on - strand, within BT0399 at 487.771 kb on - strand, within BT0399 at 487.894 kb on - strand, within BT0399 at 487.909 kb on + strand, within BT0399 at 487.909 kb on - strand, within BT0399 at 487.917 kb on + strand, within BT0399 at 487.925 kb on - strand, within BT0399 at 487.929 kb on + strand, within BT0399 at 488.077 kb on + strand, within BT0399 at 488.080 kb on - strand, within BT0399 at 488.137 kb on + strand, within BT0399 at 488.312 kb on - strand, within BT0399 at 488.375 kb on - strand, within BT0399 at 488.453 kb on - strand at 488.487 kb on - strand at 488.631 kb on + strand at 488.632 kb on - strand at 488.638 kb on - strand at 488.671 kb on - strand at 488.750 kb on - strand, within BT0400 at 489.208 kb on - strand, within BT0400
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen remove 486,463 + BT0397 0.76 -2.6 486,534 + +0.0 486,693 - BT0398 0.10 +0.0 486,693 - BT0398 0.10 -1.0 486,714 + BT0398 0.13 +0.0 486,717 + BT0398 0.13 -1.0 486,720 - BT0398 0.14 -1.0 486,784 - BT0398 0.22 +0.0 486,793 + BT0398 0.23 -1.3 486,836 - BT0398 0.28 -2.0 486,847 + BT0398 0.30 -2.3 486,891 - BT0398 0.35 +0.0 487,015 - BT0398 0.51 -2.3 487,142 - BT0398 0.67 -2.8 487,150 - BT0398 0.68 -1.0 487,171 + BT0398 0.70 +0.0 487,283 + BT0398 0.85 -1.6 487,283 + BT0398 0.85 -1.0 487,399 - +0.0 487,497 - +2.2 487,519 + -0.1 487,537 - BT0399 0.10 -1.2 487,661 - BT0399 0.21 -2.8 487,771 - BT0399 0.31 -2.0 487,771 - BT0399 0.31 -2.0 487,894 - BT0399 0.42 -2.2 487,909 + BT0399 0.43 +0.0 487,909 - BT0399 0.43 -1.6 487,917 + BT0399 0.44 -2.0 487,925 - BT0399 0.44 +0.0 487,929 + BT0399 0.45 -0.5 488,077 + BT0399 0.58 -2.2 488,080 - BT0399 0.58 -2.3 488,137 + BT0399 0.63 -2.0 488,312 - BT0399 0.78 -1.0 488,375 - BT0399 0.84 -2.7 488,453 - +1.6 488,487 - +0.0 488,631 + -1.6 488,632 - -0.4 488,638 - -1.0 488,671 - -1.5 488,750 - BT0400 0.13 +2.0 489,208 - BT0400 0.49 -2.1
Or see this region's nucleotide sequence