Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0603

Experiment: L-Glutamine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0602 and BT0603 are separated by 143 nucleotidesBT0603 and BT0604 are separated by 1 nucleotides BT0602: BT0602 - UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase (NCBI ptt file), at 742,944 to 744,167 BT0602 BT0603: BT0603 - conserved hypothetical protein (NCBI ptt file), at 744,311 to 745,423 BT0603 BT0604: BT0604 - putative coenzyme F420-reducing hydrogenase (NCBI ptt file), at 745,425 to 746,612 BT0604 Position (kb) 744 745 746Strain fitness (log2 ratio) -3 -2 -1 0 1at 743.366 kb on - strand, within BT0602at 743.481 kb on + strand, within BT0602at 743.482 kb on - strand, within BT0602at 743.573 kb on + strand, within BT0602at 743.622 kb on - strand, within BT0602at 743.843 kb on + strand, within BT0602at 743.954 kb on - strand, within BT0602at 743.973 kb on + strand, within BT0602at 744.166 kb on - strandat 744.283 kb on - strandat 744.335 kb on + strandat 744.337 kb on + strandat 744.338 kb on - strandat 744.338 kb on - strandat 744.370 kb on - strandat 744.563 kb on - strand, within BT0603at 744.631 kb on + strand, within BT0603at 744.789 kb on + strand, within BT0603at 744.889 kb on - strand, within BT0603at 744.943 kb on + strand, within BT0603at 745.202 kb on + strand, within BT0603at 745.222 kb on + strand, within BT0603at 745.325 kb on + strandat 745.452 kb on - strandat 745.477 kb on + strandat 745.478 kb on - strandat 745.547 kb on + strand, within BT0604at 745.547 kb on + strand, within BT0604at 745.570 kb on + strand, within BT0604at 745.626 kb on - strand, within BT0604at 745.664 kb on + strand, within BT0604at 745.682 kb on + strand, within BT0604at 745.682 kb on + strand, within BT0604at 745.683 kb on - strand, within BT0604at 745.833 kb on - strand, within BT0604at 745.839 kb on - strand, within BT0604at 745.860 kb on - strand, within BT0604at 746.109 kb on - strand, within BT0604at 746.167 kb on - strand, within BT0604at 746.167 kb on - strand, within BT0604

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen
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743,366 - BT0602 0.34 +0.3
743,481 + BT0602 0.44 +0.7
743,482 - BT0602 0.44 +0.3
743,573 + BT0602 0.51 -1.3
743,622 - BT0602 0.55 -2.9
743,843 + BT0602 0.73 -1.5
743,954 - BT0602 0.83 +1.3
743,973 + BT0602 0.84 +1.3
744,166 - -0.7
744,283 - -2.3
744,335 + -0.7
744,337 + -2.3
744,338 - -0.1
744,338 - +0.3
744,370 - -1.7
744,563 - BT0603 0.23 -1.3
744,631 + BT0603 0.29 -0.7
744,789 + BT0603 0.43 -1.7
744,889 - BT0603 0.52 +0.3
744,943 + BT0603 0.57 -2.9
745,202 + BT0603 0.80 +0.3
745,222 + BT0603 0.82 -0.7
745,325 + -0.7
745,452 - -1.6
745,477 + -0.3
745,478 - -2.7
745,547 + BT0604 0.10 +0.3
745,547 + BT0604 0.10 -1.5
745,570 + BT0604 0.12 -0.7
745,626 - BT0604 0.17 +1.3
745,664 + BT0604 0.20 -0.7
745,682 + BT0604 0.22 -0.7
745,682 + BT0604 0.22 -0.9
745,683 - BT0604 0.22 +0.3
745,833 - BT0604 0.34 -1.3
745,839 - BT0604 0.35 +0.3
745,860 - BT0604 0.37 -1.7
746,109 - BT0604 0.58 -1.7
746,167 - BT0604 0.62 +0.3
746,167 - BT0604 0.62 +0.3

Or see this region's nucleotide sequence