Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0856

Experiment: L-Serine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0855 and BT0856 overlap by 4 nucleotidesBT0856 and BT0857 are separated by 214 nucleotides BT0855: BT0855 - two-component system sensor histidine kinase (NCBI ptt file), at 1,043,365 to 1,044,642 BT0855 BT0856: BT0856 - two-component system response regulator (NCBI ptt file), at 1,044,639 to 1,046,015 BT0856 BT0857: BT0857 - outer membrane protein TolC, putative (NCBI ptt file), at 1,046,230 to 1,047,702 BT0857 Position (kb) 1044 1045 1046 1047Strain fitness (log2 ratio) -2 -1 0 1 2at 1043.659 kb on - strand, within BT0855at 1043.796 kb on + strand, within BT0855at 1043.889 kb on + strand, within BT0855at 1044.002 kb on - strand, within BT0855at 1044.082 kb on - strand, within BT0855at 1044.100 kb on - strand, within BT0855at 1044.247 kb on + strand, within BT0855at 1044.249 kb on + strand, within BT0855at 1044.359 kb on - strand, within BT0855at 1044.505 kb on + strand, within BT0855at 1044.544 kb on - strandat 1044.544 kb on - strandat 1044.610 kb on - strandat 1044.669 kb on + strandat 1044.878 kb on + strand, within BT0856at 1045.070 kb on - strand, within BT0856at 1045.071 kb on + strand, within BT0856at 1045.174 kb on - strand, within BT0856at 1045.423 kb on - strand, within BT0856at 1045.494 kb on - strand, within BT0856at 1045.544 kb on + strand, within BT0856at 1045.606 kb on - strand, within BT0856at 1045.725 kb on - strand, within BT0856at 1045.854 kb on - strand, within BT0856at 1045.978 kb on - strandat 1046.021 kb on - strandat 1046.028 kb on - strandat 1046.096 kb on - strandat 1046.141 kb on + strandat 1046.374 kb on - strandat 1046.405 kb on - strand, within BT0857at 1046.420 kb on - strand, within BT0857at 1046.626 kb on - strand, within BT0857at 1046.658 kb on - strand, within BT0857at 1046.712 kb on - strand, within BT0857at 1046.884 kb on + strand, within BT0857at 1046.891 kb on + strand, within BT0857at 1047.007 kb on + strand, within BT0857

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen
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1,043,659 - BT0855 0.23 -1.1
1,043,796 + BT0855 0.34 -0.1
1,043,889 + BT0855 0.41 -1.0
1,044,002 - BT0855 0.50 -1.1
1,044,082 - BT0855 0.56 +0.9
1,044,100 - BT0855 0.58 +0.2
1,044,247 + BT0855 0.69 -0.4
1,044,249 + BT0855 0.69 -0.1
1,044,359 - BT0855 0.78 +1.3
1,044,505 + BT0855 0.89 +0.2
1,044,544 - -0.5
1,044,544 - -0.1
1,044,610 - -0.9
1,044,669 + -0.1
1,044,878 + BT0856 0.17 +0.4
1,045,070 - BT0856 0.31 -0.1
1,045,071 + BT0856 0.31 -2.3
1,045,174 - BT0856 0.39 -1.6
1,045,423 - BT0856 0.57 -1.6
1,045,494 - BT0856 0.62 -1.1
1,045,544 + BT0856 0.66 -0.1
1,045,606 - BT0856 0.70 -0.6
1,045,725 - BT0856 0.79 -2.1
1,045,854 - BT0856 0.88 -1.1
1,045,978 - -0.5
1,046,021 - -1.6
1,046,028 - -0.6
1,046,096 - +1.8
1,046,141 + +0.9
1,046,374 - +1.8
1,046,405 - BT0857 0.12 -0.7
1,046,420 - BT0857 0.13 -1.1
1,046,626 - BT0857 0.27 -1.2
1,046,658 - BT0857 0.29 -2.1
1,046,712 - BT0857 0.33 +0.7
1,046,884 + BT0857 0.44 -2.1
1,046,891 + BT0857 0.45 +0.9
1,047,007 + BT0857 0.53 -0.1

Or see this region's nucleotide sequence