Experiment: L-Serine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0855 and BT0856 overlap by 4 nucleotides BT0856 and BT0857 are separated by 214 nucleotides
BT0855: BT0855 - two-component system sensor histidine kinase (NCBI ptt file), at 1,043,365 to 1,044,642
BT0855
BT0856: BT0856 - two-component system response regulator (NCBI ptt file), at 1,044,639 to 1,046,015
BT0856
BT0857: BT0857 - outer membrane protein TolC, putative (NCBI ptt file), at 1,046,230 to 1,047,702
BT0857
Position (kb)
1044
1045
1046
1047 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1043.659 kb on - strand, within BT0855 at 1043.796 kb on + strand, within BT0855 at 1043.889 kb on + strand, within BT0855 at 1044.002 kb on - strand, within BT0855 at 1044.082 kb on - strand, within BT0855 at 1044.100 kb on - strand, within BT0855 at 1044.247 kb on + strand, within BT0855 at 1044.249 kb on + strand, within BT0855 at 1044.359 kb on - strand, within BT0855 at 1044.505 kb on + strand, within BT0855 at 1044.544 kb on - strand at 1044.544 kb on - strand at 1044.610 kb on - strand at 1044.669 kb on + strand at 1044.878 kb on + strand, within BT0856 at 1045.070 kb on - strand, within BT0856 at 1045.071 kb on + strand, within BT0856 at 1045.174 kb on - strand, within BT0856 at 1045.423 kb on - strand, within BT0856 at 1045.494 kb on - strand, within BT0856 at 1045.544 kb on + strand, within BT0856 at 1045.606 kb on - strand, within BT0856 at 1045.725 kb on - strand, within BT0856 at 1045.854 kb on - strand, within BT0856 at 1045.978 kb on - strand at 1046.021 kb on - strand at 1046.028 kb on - strand at 1046.096 kb on - strand at 1046.141 kb on + strand at 1046.374 kb on - strand at 1046.405 kb on - strand, within BT0857 at 1046.420 kb on - strand, within BT0857 at 1046.626 kb on - strand, within BT0857 at 1046.658 kb on - strand, within BT0857 at 1046.712 kb on - strand, within BT0857 at 1046.884 kb on + strand, within BT0857 at 1046.891 kb on + strand, within BT0857 at 1047.007 kb on + strand, within BT0857
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen remove 1,043,659 - BT0855 0.23 -1.1 1,043,796 + BT0855 0.34 -0.1 1,043,889 + BT0855 0.41 -1.0 1,044,002 - BT0855 0.50 -1.1 1,044,082 - BT0855 0.56 +0.9 1,044,100 - BT0855 0.58 +0.2 1,044,247 + BT0855 0.69 -0.4 1,044,249 + BT0855 0.69 -0.1 1,044,359 - BT0855 0.78 +1.3 1,044,505 + BT0855 0.89 +0.2 1,044,544 - -0.5 1,044,544 - -0.1 1,044,610 - -0.9 1,044,669 + -0.1 1,044,878 + BT0856 0.17 +0.4 1,045,070 - BT0856 0.31 -0.1 1,045,071 + BT0856 0.31 -2.3 1,045,174 - BT0856 0.39 -1.6 1,045,423 - BT0856 0.57 -1.6 1,045,494 - BT0856 0.62 -1.1 1,045,544 + BT0856 0.66 -0.1 1,045,606 - BT0856 0.70 -0.6 1,045,725 - BT0856 0.79 -2.1 1,045,854 - BT0856 0.88 -1.1 1,045,978 - -0.5 1,046,021 - -1.6 1,046,028 - -0.6 1,046,096 - +1.8 1,046,141 + +0.9 1,046,374 - +1.8 1,046,405 - BT0857 0.12 -0.7 1,046,420 - BT0857 0.13 -1.1 1,046,626 - BT0857 0.27 -1.2 1,046,658 - BT0857 0.29 -2.1 1,046,712 - BT0857 0.33 +0.7 1,046,884 + BT0857 0.44 -2.1 1,046,891 + BT0857 0.45 +0.9 1,047,007 + BT0857 0.53 -0.1
Or see this region's nucleotide sequence