Experiment: L-Serine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0553 and BT0554 are separated by 362 nucleotides BT0554 and BT0555 are separated by 38 nucleotides
BT0553: BT0553 - glutamate synthase, large subunit (NCBI ptt file), at 680,307 to 684,917
BT0553
BT0554: BT0554 - glucosamine--fructose-6-phosphate aminotransferase (NCBI ptt file), at 685,280 to 687,124
BT0554
BT0555: BT0555 - amidophosphoribosyltransferase (NCBI ptt file), at 687,163 to 689,046
BT0555
Position (kb) 685
686
687
688 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 684.288 kb on - strand, within BT0553 at 684.291 kb on + strand, within BT0553 at 684.293 kb on + strand, within BT0553 at 684.499 kb on - strand at 684.537 kb on + strand at 684.563 kb on + strand at 684.677 kb on + strand at 684.677 kb on + strand at 684.741 kb on + strand at 684.745 kb on - strand at 684.830 kb on - strand at 684.830 kb on - strand at 684.842 kb on - strand at 685.276 kb on + strand at 685.277 kb on - strand at 685.279 kb on + strand at 685.298 kb on + strand at 685.298 kb on + strand at 685.300 kb on + strand at 685.407 kb on + strand at 685.586 kb on - strand, within BT0554 at 685.685 kb on + strand, within BT0554 at 685.834 kb on + strand, within BT0554 at 685.835 kb on - strand, within BT0554 at 685.882 kb on - strand, within BT0554 at 685.895 kb on - strand, within BT0554 at 685.923 kb on + strand, within BT0554 at 686.081 kb on - strand, within BT0554 at 686.104 kb on + strand, within BT0554 at 686.104 kb on + strand, within BT0554 at 686.146 kb on - strand, within BT0554 at 686.182 kb on + strand, within BT0554 at 686.273 kb on + strand, within BT0554 at 686.567 kb on - strand, within BT0554 at 686.653 kb on + strand, within BT0554 at 686.693 kb on - strand, within BT0554 at 686.693 kb on - strand, within BT0554 at 686.847 kb on + strand, within BT0554 at 686.847 kb on + strand, within BT0554 at 686.848 kb on - strand, within BT0554 at 687.022 kb on + strand at 687.025 kb on + strand at 687.051 kb on - strand at 687.051 kb on - strand at 687.056 kb on - strand at 687.068 kb on - strand at 687.081 kb on + strand at 687.149 kb on + strand at 687.150 kb on - strand at 687.201 kb on - strand at 687.359 kb on - strand, within BT0555 at 687.359 kb on - strand, within BT0555 at 687.423 kb on + strand, within BT0555 at 687.500 kb on + strand, within BT0555 at 687.500 kb on + strand, within BT0555 at 687.501 kb on - strand, within BT0555 at 687.501 kb on - strand, within BT0555 at 687.502 kb on + strand, within BT0555 at 687.502 kb on + strand, within BT0555 at 687.503 kb on - strand, within BT0555 at 687.503 kb on - strand, within BT0555 at 687.526 kb on - strand, within BT0555 at 687.526 kb on - strand, within BT0555 at 687.554 kb on + strand, within BT0555 at 687.629 kb on + strand, within BT0555 at 687.676 kb on - strand, within BT0555 at 687.691 kb on + strand, within BT0555 at 687.691 kb on + strand, within BT0555 at 687.691 kb on + strand, within BT0555 at 687.692 kb on - strand, within BT0555 at 687.798 kb on - strand, within BT0555 at 687.825 kb on - strand, within BT0555 at 687.953 kb on + strand, within BT0555 at 687.959 kb on + strand, within BT0555
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen remove 684,288 - BT0553 0.86 -1.6 684,291 + BT0553 0.86 -1.0 684,293 + BT0553 0.86 -3.9 684,499 - -5.0 684,537 + -1.6 684,563 + -1.0 684,677 + -1.6 684,677 + +0.4 684,741 + -1.6 684,745 - -1.6 684,830 - -0.0 684,830 - -2.5 684,842 - -2.8 685,276 + -1.0 685,277 - -5.5 685,279 + -2.8 685,298 + -3.8 685,298 + -2.6 685,300 + -1.6 685,407 + -2.0 685,586 - BT0554 0.17 -1.0 685,685 + BT0554 0.22 -1.6 685,834 + BT0554 0.30 -0.0 685,835 - BT0554 0.30 -3.0 685,882 - BT0554 0.33 -1.0 685,895 - BT0554 0.33 -0.0 685,923 + BT0554 0.35 -0.0 686,081 - BT0554 0.43 -2.3 686,104 + BT0554 0.45 -2.3 686,104 + BT0554 0.45 -1.0 686,146 - BT0554 0.47 -1.0 686,182 + BT0554 0.49 -1.0 686,273 + BT0554 0.54 -2.8 686,567 - BT0554 0.70 -0.0 686,653 + BT0554 0.74 -2.0 686,693 - BT0554 0.77 -2.6 686,693 - BT0554 0.77 -0.0 686,847 + BT0554 0.85 -1.6 686,847 + BT0554 0.85 -1.6 686,848 - BT0554 0.85 -2.6 687,022 + -0.0 687,025 + -1.0 687,051 - -2.8 687,051 - -1.6 687,056 - -2.0 687,068 - -2.0 687,081 + -1.0 687,149 + -1.0 687,150 - -0.0 687,201 - -0.0 687,359 - BT0555 0.10 -0.0 687,359 - BT0555 0.10 -1.6 687,423 + BT0555 0.14 -0.0 687,500 + BT0555 0.18 -1.6 687,500 + BT0555 0.18 -2.0 687,501 - BT0555 0.18 -2.0 687,501 - BT0555 0.18 -1.6 687,502 + BT0555 0.18 -2.6 687,502 + BT0555 0.18 -1.6 687,503 - BT0555 0.18 -1.0 687,503 - BT0555 0.18 -2.8 687,526 - BT0555 0.19 -3.0 687,526 - BT0555 0.19 -0.0 687,554 + BT0555 0.21 -0.0 687,629 + BT0555 0.25 -3.3 687,676 - BT0555 0.27 -1.0 687,691 + BT0555 0.28 -0.0 687,691 + BT0555 0.28 -1.6 687,691 + BT0555 0.28 -0.0 687,692 - BT0555 0.28 -2.0 687,798 - BT0555 0.34 -4.0 687,825 - BT0555 0.35 -4.8 687,953 + BT0555 0.42 -2.6 687,959 + BT0555 0.42 -1.0
Or see this region's nucleotide sequence