Experiment: L-Serine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0339 and BT0340 are separated by 9 nucleotides BT0340 and BT0341 are separated by 28 nucleotides
BT0339: BT0339 - alpha-glucosidase (NCBI ptt file), at 405,215 to 407,461
BT0339
BT0340: BT0340 - trimethylamine corrinoid protein 2 (TCP 2) (NCBI ptt file), at 407,471 to 409,279
BT0340
BT0341: BT0341 - Na+/glucose cotransporter (NCBI ptt file), at 409,308 to 410,879
BT0341
Position (kb) 407
408
409
410 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 406.511 kb on - strand, within BT0339 at 406.659 kb on - strand, within BT0339 at 406.883 kb on - strand, within BT0339 at 407.070 kb on + strand, within BT0339 at 407.309 kb on + strand at 407.309 kb on + strand at 407.310 kb on - strand at 407.428 kb on - strand at 407.434 kb on + strand at 407.438 kb on + strand at 407.514 kb on - strand at 407.538 kb on + strand at 407.552 kb on - strand at 407.672 kb on + strand, within BT0340 at 407.673 kb on - strand, within BT0340 at 407.673 kb on - strand, within BT0340 at 407.794 kb on - strand, within BT0340 at 407.813 kb on - strand, within BT0340 at 407.881 kb on + strand, within BT0340 at 407.963 kb on - strand, within BT0340 at 407.963 kb on - strand, within BT0340 at 407.963 kb on - strand, within BT0340 at 408.039 kb on - strand, within BT0340 at 408.177 kb on - strand, within BT0340 at 408.236 kb on + strand, within BT0340 at 408.237 kb on - strand, within BT0340 at 408.704 kb on - strand, within BT0340 at 408.757 kb on + strand, within BT0340 at 408.757 kb on + strand, within BT0340 at 408.758 kb on - strand, within BT0340 at 408.873 kb on + strand, within BT0340 at 408.895 kb on + strand, within BT0340 at 408.896 kb on - strand, within BT0340 at 408.924 kb on + strand, within BT0340 at 409.065 kb on + strand, within BT0340 at 409.069 kb on + strand, within BT0340 at 409.100 kb on + strand at 409.101 kb on - strand at 409.219 kb on + strand at 409.231 kb on + strand at 409.278 kb on - strand at 409.298 kb on + strand at 409.383 kb on - strand at 409.384 kb on + strand at 409.494 kb on - strand, within BT0341 at 409.494 kb on - strand, within BT0341 at 409.501 kb on + strand, within BT0341 at 409.501 kb on + strand, within BT0341 at 409.688 kb on + strand, within BT0341 at 409.697 kb on + strand, within BT0341 at 409.759 kb on + strand, within BT0341 at 409.793 kb on - strand, within BT0341 at 409.804 kb on + strand, within BT0341 at 409.805 kb on - strand, within BT0341 at 409.931 kb on - strand, within BT0341 at 410.072 kb on - strand, within BT0341
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen remove 406,511 - BT0339 0.58 -2.8 406,659 - BT0339 0.64 -1.5 406,883 - BT0339 0.74 -1.7 407,070 + BT0339 0.83 -1.0 407,309 + -0.0 407,309 + -0.0 407,310 - +1.0 407,428 - -3.0 407,434 + -1.2 407,438 + -0.6 407,514 - -0.0 407,538 + -0.6 407,552 - -1.0 407,672 + BT0340 0.11 -2.6 407,673 - BT0340 0.11 -1.6 407,673 - BT0340 0.11 -1.0 407,794 - BT0340 0.18 -0.5 407,813 - BT0340 0.19 -3.7 407,881 + BT0340 0.23 -2.6 407,963 - BT0340 0.27 +1.0 407,963 - BT0340 0.27 -0.0 407,963 - BT0340 0.27 -2.2 408,039 - BT0340 0.31 -1.0 408,177 - BT0340 0.39 -1.6 408,236 + BT0340 0.42 -1.0 408,237 - BT0340 0.42 -0.0 408,704 - BT0340 0.68 -0.8 408,757 + BT0340 0.71 -1.4 408,757 + BT0340 0.71 -1.6 408,758 - BT0340 0.71 -0.6 408,873 + BT0340 0.78 -1.6 408,895 + BT0340 0.79 +0.6 408,896 - BT0340 0.79 -1.6 408,924 + BT0340 0.80 +0.3 409,065 + BT0340 0.88 -1.6 409,069 + BT0340 0.88 -1.3 409,100 + -1.3 409,101 - +2.0 409,219 + -0.4 409,231 + -1.0 409,278 - +0.7 409,298 + -1.0 409,383 - -2.4 409,384 + +0.6 409,494 - BT0341 0.12 -1.0 409,494 - BT0341 0.12 -0.0 409,501 + BT0341 0.12 -0.5 409,501 + BT0341 0.12 -1.0 409,688 + BT0341 0.24 -0.3 409,697 + BT0341 0.25 -0.0 409,759 + BT0341 0.29 +0.6 409,793 - BT0341 0.31 -1.0 409,804 + BT0341 0.32 +0.3 409,805 - BT0341 0.32 -0.6 409,931 - BT0341 0.40 +2.3 410,072 - BT0341 0.49 -1.0
Or see this region's nucleotide sequence