Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2060

Experiment: L-Glutamine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT2058 and BT2059 are separated by 70 nucleotidesBT2059 and BT2060 are separated by 222 nucleotidesBT2060 and BT2061 are separated by 18 nucleotides BT2058: BT2058 - putative isoprenyl synthetase (NCBI ptt file), at 2,577,222 to 2,578,196 BT2058 BT2059: BT2059 - TonB (NCBI ptt file), at 2,578,267 to 2,578,950 BT2059 BT2060: BT2060 - cytidylate kinase (NCBI ptt file), at 2,579,173 to 2,579,862 BT2060 BT2061: BT2061 - penicillin tolerance protein LytB (NCBI ptt file), at 2,579,881 to 2,580,750 BT2061 Position (kb) 2579 2580Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2578.253 kb on - strandat 2578.579 kb on - strand, within BT2059at 2578.607 kb on - strand, within BT2059at 2578.628 kb on - strand, within BT2059at 2578.771 kb on - strand, within BT2059at 2578.963 kb on - strandat 2578.993 kb on - strandat 2579.133 kb on + strandat 2579.156 kb on + strandat 2579.849 kb on + strandat 2579.880 kb on + strandat 2580.741 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen
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2,578,253 - -0.4
2,578,579 - BT2059 0.46 +3.0
2,578,607 - BT2059 0.50 -0.0
2,578,628 - BT2059 0.53 +2.6
2,578,771 - BT2059 0.74 +2.8
2,578,963 - -0.5
2,578,993 - -3.7
2,579,133 + -0.0
2,579,156 + -1.6
2,579,849 + -1.8
2,579,880 + -1.6
2,580,741 - -0.0

Or see this region's nucleotide sequence