Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0926

Experiment: L-Glutamine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0924 and BT0925 are separated by 3 nucleotidesBT0925 and BT0926 overlap by 8 nucleotidesBT0926 and BT0927 are separated by 125 nucleotides BT0924: BT0924 - conserved hypothetical protein (NCBI ptt file), at 1,137,748 to 1,138,899 BT0924 BT0925: BT0925 - ABC transporter, ATP-binding protein (NCBI ptt file), at 1,138,903 to 1,139,646 BT0925 BT0926: BT0926 - ABC-type transport, permease protein (NCBI ptt file), at 1,139,639 to 1,140,595 BT0926 BT0927: BT0927 - two-component system sensor histidine kinase (NCBI ptt file), at 1,140,721 to 1,141,998 BT0927 Position (kb) 1139 1140 1141Strain fitness (log2 ratio) -3 -2 -1 0 1at 1138.742 kb on + strand, within BT0924at 1138.842 kb on + strandat 1138.886 kb on - strandat 1138.923 kb on - strandat 1138.971 kb on - strandat 1139.044 kb on - strand, within BT0925at 1139.170 kb on + strand, within BT0925at 1139.273 kb on + strand, within BT0925at 1139.312 kb on - strand, within BT0925at 1139.323 kb on - strand, within BT0925at 1139.427 kb on + strand, within BT0925at 1139.510 kb on + strand, within BT0925at 1139.522 kb on + strand, within BT0925at 1139.740 kb on + strand, within BT0926at 1139.740 kb on + strand, within BT0926at 1139.746 kb on + strand, within BT0926at 1139.773 kb on + strand, within BT0926at 1139.836 kb on + strand, within BT0926at 1139.989 kb on + strand, within BT0926at 1139.996 kb on - strand, within BT0926at 1140.035 kb on - strand, within BT0926at 1140.180 kb on + strand, within BT0926at 1140.181 kb on - strand, within BT0926at 1140.257 kb on + strand, within BT0926at 1140.258 kb on - strand, within BT0926at 1140.450 kb on + strand, within BT0926at 1140.538 kb on + strandat 1140.538 kb on + strandat 1140.558 kb on - strandat 1140.601 kb on + strandat 1140.602 kb on - strandat 1140.621 kb on + strandat 1140.649 kb on + strandat 1140.716 kb on + strandat 1141.523 kb on - strand, within BT0927

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen
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1,138,742 + BT0924 0.86 -0.1
1,138,842 + -1.1
1,138,886 - -0.1
1,138,923 - -0.4
1,138,971 - -1.7
1,139,044 - BT0925 0.19 +0.9
1,139,170 + BT0925 0.36 -1.4
1,139,273 + BT0925 0.50 -0.1
1,139,312 - BT0925 0.55 -1.7
1,139,323 - BT0925 0.56 -0.6
1,139,427 + BT0925 0.70 +0.5
1,139,510 + BT0925 0.82 -1.8
1,139,522 + BT0925 0.83 -0.1
1,139,740 + BT0926 0.11 -0.1
1,139,740 + BT0926 0.11 +0.9
1,139,746 + BT0926 0.11 -1.4
1,139,773 + BT0926 0.14 +1.5
1,139,836 + BT0926 0.21 -1.8
1,139,989 + BT0926 0.37 -1.7
1,139,996 - BT0926 0.37 +0.7
1,140,035 - BT0926 0.41 -2.7
1,140,180 + BT0926 0.57 +0.1
1,140,181 - BT0926 0.57 +1.5
1,140,257 + BT0926 0.65 -1.8
1,140,258 - BT0926 0.65 +0.5
1,140,450 + BT0926 0.85 -0.6
1,140,538 + -1.1
1,140,538 + +1.1
1,140,558 - -2.1
1,140,601 + -0.1
1,140,602 - +0.5
1,140,621 + -0.1
1,140,649 + -0.1
1,140,716 + -1.1
1,141,523 - BT0927 0.63 -2.9

Or see this region's nucleotide sequence