Experiment: L-Glutamine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT4766 and BT4767 are separated by 272 nucleotides BT4767 and BT4768 are separated by 24 nucleotides BT4768 and BT4769 are separated by 3 nucleotides BT4769 and BT4770 are separated by 15 nucleotides
BT4766: BT4766 - hypothetical protein (NCBI ptt file), at 6,250,925 to 6,251,353
BT4766
BT4767: BT4767 - conserved protein found in conjugate transposon (NCBI ptt file), at 6,251,626 to 6,251,925
BT4767
BT4768: BT4768 - conserved protein found in conjugate transposon (NCBI ptt file), at 6,251,950 to 6,252,270
BT4768
BT4769: BT4769 - conserved protein found in conjugate transposon (NCBI ptt file), at 6,252,274 to 6,252,444
BT4769
BT4770: BT4770 - conserved protein found in conjugate transposon (NCBI ptt file), at 6,252,460 to 6,254,778
BT4770
Position (kb)
6251
6252
6253 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6251.099 kb on + strand, within BT4766 at 6251.124 kb on + strand, within BT4766 at 6251.244 kb on - strand, within BT4766 at 6251.293 kb on + strand, within BT4766 at 6251.309 kb on + strand, within BT4766 at 6251.312 kb on - strand at 6251.544 kb on - strand at 6251.847 kb on + strand, within BT4767 at 6251.847 kb on + strand, within BT4767 at 6251.949 kb on + strand at 6251.949 kb on - strand at 6251.950 kb on - strand at 6252.073 kb on + strand, within BT4768 at 6252.074 kb on - strand, within BT4768 at 6252.074 kb on - strand, within BT4768 at 6252.074 kb on - strand at 6252.075 kb on + strand, within BT4768 at 6252.075 kb on + strand, within BT4768 at 6252.274 kb on - strand at 6252.284 kb on + strand at 6252.753 kb on + strand, within BT4770 at 6252.844 kb on + strand, within BT4770 at 6252.939 kb on + strand, within BT4770 at 6253.033 kb on + strand, within BT4770 at 6253.072 kb on - strand, within BT4770
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen remove 6,251,099 + BT4766 0.41 -1.0 6,251,124 + BT4766 0.46 -1.1 6,251,244 - BT4766 0.74 -2.4 6,251,293 + BT4766 0.86 -2.2 6,251,309 + BT4766 0.90 -1.8 6,251,312 - -1.2 6,251,544 - -0.0 6,251,847 + BT4767 0.74 -2.2 6,251,847 + BT4767 0.74 -2.6 6,251,949 + -2.4 6,251,949 - -2.4 6,251,950 - -0.4 6,252,073 + BT4768 0.38 -1.0 6,252,074 - BT4768 0.39 +2.2 6,252,074 - BT4768 0.39 -0.2 6,252,074 - -2.6 6,252,075 + BT4768 0.39 -0.6 6,252,075 + BT4768 0.39 +0.6 6,252,274 - -1.0 6,252,284 + -0.0 6,252,753 + BT4770 0.13 -0.6 6,252,844 + BT4770 0.17 -2.0 6,252,939 + BT4770 0.21 -1.0 6,253,033 + BT4770 0.25 -0.0 6,253,072 - BT4770 0.26 -0.5
Or see this region's nucleotide sequence