Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3514

Experiment: L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen
4,534,564	-		BT3513	0.62	-3.6
4,534,564	-		BT3513	0.62	-0.8
4,534,620	-		BT3513	0.65	-1.2
4,534,648	-		BT3513	0.66	-2.0
4,534,662	-		BT3513	0.67	-1.8
4,534,677	-		BT3513	0.68	-0.8
4,534,791	-		BT3513	0.74	-0.4
4,534,801	+		BT3513	0.75	-1.0
4,534,823	+		BT3513	0.76	-0.6
4,534,823	+		BT3513	0.76	+1.6
4,534,824	-		BT3513	0.76	-3.6
4,534,833	+		BT3513	0.77	+0.0
4,534,855	-		BT3513	0.78	-0.8
4,534,855	-		BT3513	0.78	+1.3
4,534,893	+		BT3513	0.80	-3.6
4,534,893	+		BT3513	0.80	-1.8
4,534,893	+		BT3513	0.80	-1.3
4,534,894	-		BT3513	0.80	+0.4
4,534,921	-		BT3513	0.81	-0.8
4,534,970	+		BT3513	0.84	-3.1
4,534,971	-		BT3513	0.84	-1.9
4,534,971	-		BT3513	0.84	-1.6
4,534,975	-		BT3513	0.84	-1.0
4,535,075	+		BT3513	0.90	+0.0
4,535,130	+				+0.0
4,535,173	-				+1.6
4,535,173	-				+1.3
4,535,262	-				+1.6
4,535,272	-				-2.9
4,535,285	-				-1.0
4,535,302	+				-1.0
4,535,444	-				-1.0
4,535,452	+				+1.6
4,535,455	-				-1.6
4,535,537	-				+0.0
4,535,537	-				+2.0
4,535,573	+				-3.1
4,535,573	-				-0.7
4,535,575	+				-2.3
4,535,611	+				+2.0
4,535,612	-				-1.0
4,535,640	-				-2.6
4,535,643	+				-1.6
4,535,684	-				+0.8
4,535,718	-				-1.6
4,535,810	+				+0.4
4,535,811	-				-2.3
4,535,811	-				-1.0
4,535,819	+				-0.7
4,535,870	-		BT3514	0.11	+1.6
4,535,874	-		BT3514	0.11	+0.4
4,535,874	-		BT3514	0.11	+0.0
4,535,957	-		BT3514	0.14	-1.0
4,536,137	-		BT3514	0.20	-0.6
4,536,254	+		BT3514	0.24	+0.0
4,536,255	-		BT3514	0.24	+1.0
4,536,297	+		BT3514	0.25	-1.5
4,536,298	-		BT3514	0.25	-1.6
4,536,322	+		BT3514	0.26	-1.3
4,536,323	-		BT3514	0.26	+0.0
4,536,329	+		BT3514	0.26	-2.0
4,536,424	-		BT3514	0.30	-0.3
4,536,440	+		BT3514	0.30	-2.6
4,536,461	+		BT3514	0.31	-2.0
4,536,499	-		BT3514	0.32	-2.0
4,536,499	-		BT3514	0.32	-4.3
4,536,501	-		BT3514	0.32	-1.0
4,536,664	-		BT3514	0.38	-2.8
4,536,665	+		BT3514	0.38	-2.3
4,536,665	+		BT3514	0.38	+1.0
4,536,665	+		BT3514	0.38	-1.0
4,536,684	+		BT3514	0.38	-0.9
4,536,749	+		BT3514	0.41	-2.1
4,536,812	+		BT3514	0.43	-0.7
4,536,813	-		BT3514	0.43	-1.6
4,536,813	-		BT3514	0.43	+0.0
4,536,813	-		BT3514	0.43	-1.1
4,536,815	-		BT3514	0.43	-1.8
4,536,836	+		BT3514	0.44	-2.8
4,536,841	-		BT3514	0.44	+1.0
4,536,849	+		BT3514	0.44	-2.0
4,536,852	-		BT3514	0.44	-2.0
4,536,852	-		BT3514	0.44	-4.6
4,536,854	+		BT3514	0.44	+0.0
4,536,854	+		BT3514	0.44	-0.5
4,536,855	-		BT3514	0.44	-1.3
4,536,855	-		BT3514	0.44	+0.0
4,536,876	+		BT3514	0.45	-2.0
4,536,877	-		BT3514	0.45	-1.2
4,536,897	+		BT3514	0.46	+0.0
4,536,903	-		BT3514	0.46	+2.0
4,536,903	-		BT3514	0.46	-2.4
4,536,987	+		BT3514	0.49	+0.0
4,536,988	-		BT3514	0.49	-2.0
4,536,992	+		BT3514	0.49	+1.6
4,536,995	-		BT3514	0.49	-1.5
4,537,068	+		BT3514	0.51	+0.0
4,537,069	-		BT3514	0.51	-2.0
4,537,073	+		BT3514	0.52	-1.6
4,537,073	+		BT3514	0.52	-0.6
4,537,073	+		BT3514	0.52	-3.4
4,537,073	+		BT3514	0.52	-0.6
4,537,074	-		BT3514	0.52	-2.7
4,537,087	+		BT3514	0.52	-1.9
4,537,100	+		BT3514	0.52	+0.0
4,537,103	-		BT3514	0.53	+0.0
4,537,131	+		BT3514	0.54	-2.0
4,537,131	+		BT3514	0.54	-1.7
4,537,131	+		BT3514	0.54	-2.6
4,537,132	-		BT3514	0.54	+0.0
4,537,181	+		BT3514	0.55	-1.5
4,537,181	+		BT3514	0.55	-1.0
4,537,209	+		BT3514	0.56	-3.1
4,537,209	+		BT3514	0.56	+0.7
4,537,240	-				-2.3
4,537,241	+		BT3514	0.57	-1.9
4,537,296	-		BT3514	0.59	-1.8
4,537,308	+		BT3514	0.60	+0.6
4,537,315	+		BT3514	0.60	-1.8
4,537,315	+		BT3514	0.60	-1.8
4,537,315	+		BT3514	0.60	-2.1
4,537,320	+		BT3514	0.60	-0.6
4,537,355	+		BT3514	0.61	+1.4
4,537,356	-		BT3514	0.61	-2.3
4,537,356	-		BT3514	0.61	-0.8
4,537,386	+		BT3514	0.62	-2.0
4,537,386	+		BT3514	0.62	-1.5
4,537,440	+		BT3514	0.64	-0.2
4,537,441	-		BT3514	0.64	-4.2
4,537,441	-		BT3514	0.64	-1.0
4,537,441	-		BT3514	0.64	-1.6
4,537,441	-		BT3514	0.64	-0.2
4,537,449	-		BT3514	0.64	+0.0
4,537,473	+		BT3514	0.65	-2.6
4,537,473	+		BT3514	0.65	+1.0
4,537,474	-		BT3514	0.65	-1.6
4,537,474	-		BT3514	0.65	-1.3
4,537,528	-		BT3514	0.67	-1.6
4,537,545	+		BT3514	0.68	-1.0
4,537,575	+		BT3514	0.69	-2.0
4,537,576	-		BT3514	0.69	-1.8
4,537,653	-		BT3514	0.71	-1.6
4,537,675	-		BT3514	0.72	-2.3
4,537,683	-		BT3514	0.72	-0.8
4,537,696	+		BT3514	0.73	+1.0
4,537,696	+		BT3514	0.73	-2.4
4,537,700	+		BT3514	0.73	-1.0
4,537,700	+		BT3514	0.73	-1.6
4,537,700	+		BT3514	0.73	-0.8
4,537,701	-		BT3514	0.73	-1.0
4,537,702	+		BT3514	0.73	-1.8
4,537,702	+		BT3514	0.73	+0.0
4,537,702	+		BT3514	0.73	-0.9
4,537,702	+		BT3514	0.73	-1.8
4,537,703	-		BT3514	0.73	-1.6
4,537,704	+		BT3514	0.73	-1.4
4,537,704	+		BT3514	0.73	-2.0
4,537,705	-		BT3514	0.73	+3.2
4,537,726	+		BT3514	0.74	-2.0
4,537,726	+		BT3514	0.74	-1.2
4,537,803	-		BT3514	0.76	-1.0
4,537,806	+		BT3514	0.76	+0.8
4,537,806	+		BT3514	0.76	+0.0
4,537,806	+		BT3514	0.76	-1.0
4,537,806	+		BT3514	0.76	-0.6
4,537,807	-		BT3514	0.76	-0.7
4,537,807	-		BT3514	0.76	-0.9
4,537,807	-		BT3514	0.76	+0.0
4,537,807	-		BT3514	0.76	-1.7
4,537,809	-		BT3514	0.77	-3.0
4,537,811	-		BT3514	0.77	-3.8
4,537,866	-		BT3514	0.78	+1.0
4,537,906	+		BT3514	0.80	-2.6
4,537,906	+		BT3514	0.80	+1.2
4,537,950	+		BT3514	0.81	+1.8
4,537,950	+		BT3514	0.81	+0.0
4,538,012	+		BT3514	0.83	-1.0
4,538,012	+		BT3514	0.83	-1.6
4,538,147	+		BT3514	0.88	-2.3
4,538,147	+		BT3514	0.88	-2.1
4,538,148	-		BT3514	0.88	-1.0
4,538,160	+		BT3514	0.88	-1.3
4,538,168	-		BT3514	0.89	-0.5
4,538,168	-		BT3514	0.89	+0.0
4,538,168	-		BT3514	0.89	+0.0
4,538,169	+		BT3514	0.89	-2.0
4,538,169	+		BT3514	0.89	+0.6
4,538,172	-		BT3514	0.89	+1.0
4,538,172	-		BT3514	0.89	+0.0
4,538,172	-		BT3514	0.89	-0.7
4,538,232	-				-2.1
4,538,232	-				-1.6
4,538,234	+				-1.5
4,538,235	-				-1.2
4,538,250	+				-3.0
4,538,250	+				-2.3
4,538,250	+				-2.8
4,538,251	-				-1.8
4,538,251	-				-0.9
4,538,251	-				+0.0
4,538,327	+				-1.5
4,538,361	-				-0.5
4,538,367	+				-1.7
4,538,372	-				-0.5
4,538,401	+				-2.8
4,538,401	+				+0.4
4,538,402	-				-2.0
4,538,470	-				-1.3
4,538,495	+				+2.4
4,538,601	-				-1.5
4,538,671	-		BT3515	0.15	-2.0
4,538,672	+		BT3515	0.15	+1.0
4,538,673	-		BT3515	0.15	-3.1
4,538,673	-		BT3515	0.15	+0.0
4,538,673	-		BT3515	0.15	-0.5
4,538,673	-		BT3515	0.15	-1.8
4,538,677	+		BT3515	0.15	-1.5
4,538,678	-		BT3515	0.15	-1.0
4,538,680	-		BT3515	0.16	+0.0
4,538,730	+		BT3515	0.20	+1.0
4,538,732	+		BT3515	0.20	-0.6
4,538,733	-		BT3515	0.20	-1.8
4,538,798	+		BT3515	0.26	+0.0
4,538,799	-		BT3515	0.26	-1.0
4,538,839	-		BT3515	0.29	-0.5
4,538,839	-		BT3515	0.29	-1.5
4,538,924	+		BT3515	0.36	+1.5
4,538,925	-		BT3515	0.36	-1.0
4,538,925	-		BT3515	0.36	-1.5
4,538,925	-		BT3515	0.36	-2.8
4,538,930	+		BT3515	0.37	-1.0
4,538,938	-		BT3515	0.38	-2.5
4,539,041	-		BT3515	0.46	-0.8
4,539,052	-		BT3515	0.47	-3.1
4,539,055	+		BT3515	0.48	-1.5
4,539,101	+		BT3515	0.52	-1.0
4,539,101	+		BT3515	0.52	+0.5
4,539,102	-		BT3515	0.52	-1.5
4,539,106	+		BT3515	0.52	-2.3
4,539,107	-		BT3515	0.52	+0.0
4,539,163	+		BT3515	0.57	+0.0
4,539,163	+		BT3515	0.57	-2.6
4,539,164	-		BT3515	0.57	-1.6
4,539,173	+		BT3515	0.58	+0.6
4,539,253	+		BT3515	0.65	-0.4
4,539,277	-		BT3515	0.67	-1.8
4,539,281	-		BT3515	0.67	+0.8
4,539,282	+		BT3515	0.67	+2.8
4,539,293	-		BT3515	0.68	-2.1
4,539,297	-		BT3515	0.68	-1.5
4,539,327	+		BT3515	0.71	+0.0
4,539,327	+		BT3515	0.71	-2.3
4,539,327	+		BT3515	0.71	-2.8
4,539,328	-		BT3515	0.71	-2.5
4,539,328	-		BT3515	0.71	-1.0
4,539,356	+		BT3515	0.73	-1.1
4,539,356	+		BT3515	0.73	-0.9
4,539,356	+		BT3515	0.73	-3.1
4,539,356	+		BT3515	0.73	+0.0
4,539,356	+		BT3515	0.73	-0.5
4,539,357	-		BT3515	0.73	-1.7
4,539,357	-		BT3515	0.73	-0.5
4,539,357	-		BT3515	0.73	-1.3
4,539,357	-		BT3515	0.73	-2.8
4,539,390	-		BT3515	0.76	-1.7
4,539,390	-		BT3515	0.76	-2.3
4,539,410	+		BT3515	0.78	-2.8
4,539,411	-		BT3515	0.78	-0.5
4,539,411	-		BT3515	0.78	-2.7
4,539,437	-		BT3515	0.80	-0.8
4,539,439	-		BT3515	0.80	-2.3