Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0081

Experiment: L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0079 and BT0080 are separated by 43 nucleotidesBT0080 and BT0081 are separated by 24 nucleotidesBT0081 and BT0082 are separated by 97 nucleotides BT0079: BT0079 - putative anti-restriction protein (NCBI ptt file), at 76,009 to 76,542 BT0079 BT0080: BT0080 - hypothetical protein (NCBI ptt file), at 76,586 to 76,798 BT0080 BT0081: BT0081 - hypothetical protein (NCBI ptt file), at 76,823 to 77,017 BT0081 BT0082: BT0082 - hypothetical protein (NCBI ptt file), at 77,115 to 78,035 BT0082 Position (kb) 76 77 78Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 75.823 kb on + strandat 75.824 kb on - strandat 75.826 kb on - strandat 75.839 kb on - strandat 75.874 kb on - strandat 75.894 kb on - strandat 75.986 kb on + strandat 76.020 kb on - strandat 76.042 kb on + strandat 76.043 kb on - strandat 76.043 kb on - strandat 76.054 kb on + strandat 76.064 kb on - strand, within BT0079at 76.064 kb on - strand, within BT0079at 76.095 kb on - strand, within BT0079at 76.095 kb on - strand, within BT0079at 76.329 kb on - strand, within BT0079at 76.329 kb on - strand, within BT0079at 76.329 kb on - strand, within BT0079at 76.354 kb on - strand, within BT0079at 76.388 kb on - strand, within BT0079at 76.412 kb on - strand, within BT0079at 76.459 kb on + strand, within BT0079at 76.495 kb on - strandat 76.504 kb on + strandat 76.544 kb on + strandat 76.601 kb on - strandat 76.601 kb on - strandat 76.647 kb on - strand, within BT0080at 76.687 kb on - strand, within BT0080at 76.691 kb on - strand, within BT0080at 76.792 kb on + strandat 76.809 kb on + strandat 76.819 kb on + strandat 76.820 kb on - strandat 76.822 kb on + strandat 76.881 kb on - strand, within BT0081at 76.885 kb on + strand, within BT0081at 76.956 kb on + strand, within BT0081at 76.964 kb on - strand, within BT0081at 76.973 kb on - strand, within BT0081at 77.107 kb on - strandat 77.110 kb on + strandat 77.171 kb on + strandat 77.193 kb on + strandat 77.193 kb on + strandat 77.213 kb on + strand, within BT0082at 77.215 kb on + strand, within BT0082at 77.216 kb on - strand, within BT0082at 77.218 kb on - strand, within BT0082at 77.218 kb on - strand, within BT0082at 77.219 kb on + strand, within BT0082at 77.219 kb on + strand, within BT0082at 77.219 kb on + strand, within BT0082at 77.220 kb on - strand, within BT0082at 77.220 kb on - strand, within BT0082at 77.220 kb on - strand, within BT0082at 77.225 kb on + strand, within BT0082at 77.282 kb on + strand, within BT0082at 77.288 kb on + strand, within BT0082at 77.312 kb on + strand, within BT0082at 77.351 kb on - strand, within BT0082at 77.376 kb on - strand, within BT0082at 77.376 kb on - strand, within BT0082at 77.385 kb on + strand, within BT0082at 77.427 kb on - strand, within BT0082at 77.430 kb on - strand, within BT0082at 77.460 kb on + strand, within BT0082at 77.471 kb on - strand, within BT0082at 77.478 kb on - strand, within BT0082at 77.481 kb on + strand, within BT0082at 77.519 kb on + strand, within BT0082at 77.519 kb on + strand, within BT0082at 77.520 kb on - strand, within BT0082at 77.520 kb on - strand, within BT0082at 77.583 kb on + strand, within BT0082at 77.584 kb on - strand, within BT0082at 77.589 kb on + strand, within BT0082at 77.589 kb on + strand, within BT0082at 77.590 kb on - strand, within BT0082at 77.590 kb on - strand, within BT0082at 77.591 kb on + strand, within BT0082at 77.591 kb on + strand, within BT0082at 77.602 kb on - strand, within BT0082at 77.608 kb on - strand, within BT0082at 77.628 kb on + strand, within BT0082at 77.654 kb on + strand, within BT0082at 77.706 kb on + strand, within BT0082at 77.709 kb on - strand, within BT0082at 77.776 kb on + strand, within BT0082at 77.801 kb on + strand, within BT0082at 77.802 kb on - strand, within BT0082at 77.825 kb on + strand, within BT0082at 77.866 kb on - strand, within BT0082at 77.866 kb on - strand, within BT0082at 77.901 kb on - strand, within BT0082at 77.905 kb on - strand, within BT0082at 77.924 kb on + strand, within BT0082at 77.947 kb on + strandat 78.005 kb on - strandat 78.005 kb on - strandat 78.006 kb on + strandat 78.011 kb on + strandat 78.011 kb on + strandat 78.012 kb on - strandat 78.016 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen
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75,823 + -1.8
75,824 - -1.7
75,826 - -3.7
75,839 - -2.4
75,874 - -0.5
75,894 - +1.9
75,986 + -2.9
76,020 - -2.1
76,042 + -3.1
76,043 - -0.9
76,043 - -0.8
76,054 + -0.1
76,064 - BT0079 0.10 -0.1
76,064 - BT0079 0.10 -0.7
76,095 - BT0079 0.16 -1.7
76,095 - BT0079 0.16 -0.1
76,329 - BT0079 0.60 -3.3
76,329 - BT0079 0.60 -0.1
76,329 - BT0079 0.60 -2.1
76,354 - BT0079 0.65 -1.1
76,388 - BT0079 0.71 +1.5
76,412 - BT0079 0.75 -1.8
76,459 + BT0079 0.84 -0.1
76,495 - -3.1
76,504 + -2.5
76,544 + -0.1
76,601 - -1.1
76,601 - -0.1
76,647 - BT0080 0.29 -0.1
76,687 - BT0080 0.47 -1.7
76,691 - BT0080 0.49 -2.2
76,792 + +0.3
76,809 + -2.1
76,819 + -2.7
76,820 - -1.9
76,822 + -1.7
76,881 - BT0081 0.30 -2.7
76,885 + BT0081 0.32 -1.2
76,956 + BT0081 0.68 -3.4
76,964 - BT0081 0.72 -0.1
76,973 - BT0081 0.77 -2.7
77,107 - -0.1
77,110 + +1.9
77,171 + -0.1
77,193 + +1.9
77,193 + -0.1
77,213 + BT0082 0.11 +0.5
77,215 + BT0082 0.11 -1.1
77,216 - BT0082 0.11 -0.3
77,218 - BT0082 0.11 -2.6
77,218 - BT0082 0.11 -2.4
77,219 + BT0082 0.11 -0.4
77,219 + BT0082 0.11 +0.9
77,219 + BT0082 0.11 -2.1
77,220 - BT0082 0.11 -0.3
77,220 - BT0082 0.11 -2.3
77,220 - BT0082 0.11 -2.2
77,225 + BT0082 0.12 -0.1
77,282 + BT0082 0.18 -2.4
77,288 + BT0082 0.19 +0.2
77,312 + BT0082 0.21 -1.5
77,351 - BT0082 0.26 -3.3
77,376 - BT0082 0.28 -3.1
77,376 - BT0082 0.28 -1.1
77,385 + BT0082 0.29 -0.1
77,427 - BT0082 0.34 -0.1
77,430 - BT0082 0.34 -1.7
77,460 + BT0082 0.37 -2.2
77,471 - BT0082 0.39 -2.4
77,478 - BT0082 0.39 -0.1
77,481 + BT0082 0.40 +1.2
77,519 + BT0082 0.44 -1.8
77,519 + BT0082 0.44 -2.4
77,520 - BT0082 0.44 -1.4
77,520 - BT0082 0.44 -2.4
77,583 + BT0082 0.51 -0.2
77,584 - BT0082 0.51 -3.6
77,589 + BT0082 0.51 -2.1
77,589 + BT0082 0.51 -0.7
77,590 - BT0082 0.52 -0.1
77,590 - BT0082 0.52 +1.5
77,591 + BT0082 0.52 -1.5
77,591 + BT0082 0.52 +0.5
77,602 - BT0082 0.53 -0.1
77,608 - BT0082 0.54 -2.4
77,628 + BT0082 0.56 -0.8
77,654 + BT0082 0.59 -1.1
77,706 + BT0082 0.64 -2.8
77,709 - BT0082 0.64 -2.2
77,776 + BT0082 0.72 -3.1
77,801 + BT0082 0.74 +0.9
77,802 - BT0082 0.75 -0.1
77,825 + BT0082 0.77 -1.1
77,866 - BT0082 0.82 -1.7
77,866 - BT0082 0.82 -2.7
77,901 - BT0082 0.85 -1.1
77,905 - BT0082 0.86 +0.9
77,924 + BT0082 0.88 -2.1
77,947 + -3.2
78,005 - -0.7
78,005 - -2.4
78,006 + -0.1
78,011 + -3.7
78,011 + +0.3
78,012 - -3.0
78,016 - -0.1

Or see this region's nucleotide sequence