Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4773

Experiment: L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT4770 and BT4771 are separated by 154 nucleotidesBT4771 and BT4772 are separated by 4 nucleotidesBT4772 and BT4773 are separated by 159 nucleotidesBT4773 and BT4774 are separated by 28 nucleotides BT4770: BT4770 - conserved protein found in conjugate transposon (NCBI ptt file), at 6,252,460 to 6,254,778 BT4770 BT4771: BT4771 - hypothetical protein (NCBI ptt file), at 6,254,933 to 6,255,208 BT4771 BT4772: BT4772 - conserved protein found in conjugate transposon (NCBI ptt file), at 6,255,213 to 6,255,371 BT4772 BT4773: BT4773 - conserved protein found in conjugate transposon (NCBI ptt file), at 6,255,531 to 6,255,842 BT4773 BT4774: BT4774 - conserved protein found in conjugate transposon (NCBI ptt file), at 6,255,871 to 6,256,884 BT4774 Position (kb) 6255 6256Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 6254.626 kb on + strandat 6254.627 kb on - strandat 6254.737 kb on - strandat 6254.777 kb on - strandat 6254.786 kb on - strandat 6255.036 kb on - strand, within BT4771at 6255.187 kb on - strandat 6255.245 kb on - strand, within BT4772at 6255.469 kb on + strandat 6255.736 kb on - strand, within BT4773at 6255.736 kb on - strand, within BT4773at 6255.736 kb on - strand, within BT4773at 6255.736 kb on - strand, within BT4773at 6255.871 kb on - strandat 6255.871 kb on - strandat 6255.875 kb on + strandat 6255.876 kb on - strandat 6255.878 kb on + strandat 6255.878 kb on + strandat 6255.882 kb on - strandat 6255.882 kb on - strandat 6255.888 kb on - strandat 6255.954 kb on + strandat 6256.486 kb on - strand, within BT4774at 6256.562 kb on - strand, within BT4774at 6256.688 kb on - strandat 6256.688 kb on - strand, within BT4774at 6256.688 kb on - strand, within BT4774

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen
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6,254,626 + -1.5
6,254,627 - -0.5
6,254,737 - -0.1
6,254,777 - -0.6
6,254,786 - -0.7
6,255,036 - BT4771 0.37 +1.8
6,255,187 - -1.2
6,255,245 - BT4772 0.20 -0.1
6,255,469 + -3.3
6,255,736 - BT4773 0.66 -0.1
6,255,736 - BT4773 0.66 -1.1
6,255,736 - BT4773 0.66 -4.3
6,255,736 - BT4773 0.66 -2.7
6,255,871 - +0.5
6,255,871 - -2.9
6,255,875 + -0.1
6,255,876 - -1.1
6,255,878 + -0.6
6,255,878 + -0.6
6,255,882 - -1.7
6,255,882 - -0.8
6,255,888 - -0.8
6,255,954 + -0.9
6,256,486 - BT4774 0.61 -3.9
6,256,562 - BT4774 0.68 -1.1
6,256,688 - -2.1
6,256,688 - BT4774 0.81 -1.1
6,256,688 - BT4774 0.81 +2.3

Or see this region's nucleotide sequence