Experiment: L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT4770 and BT4771 are separated by 154 nucleotides BT4771 and BT4772 are separated by 4 nucleotides BT4772 and BT4773 are separated by 159 nucleotides BT4773 and BT4774 are separated by 28 nucleotides
BT4770: BT4770 - conserved protein found in conjugate transposon (NCBI ptt file), at 6,252,460 to 6,254,778
BT4770
BT4771: BT4771 - hypothetical protein (NCBI ptt file), at 6,254,933 to 6,255,208
BT4771
BT4772: BT4772 - conserved protein found in conjugate transposon (NCBI ptt file), at 6,255,213 to 6,255,371
BT4772
BT4773: BT4773 - conserved protein found in conjugate transposon (NCBI ptt file), at 6,255,531 to 6,255,842
BT4773
BT4774: BT4774 - conserved protein found in conjugate transposon (NCBI ptt file), at 6,255,871 to 6,256,884
BT4774
Position (kb)
6255
6256 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 6254.626 kb on + strand at 6254.627 kb on - strand at 6254.737 kb on - strand at 6254.777 kb on - strand at 6254.786 kb on - strand at 6255.036 kb on - strand, within BT4771 at 6255.187 kb on - strand at 6255.245 kb on - strand, within BT4772 at 6255.469 kb on + strand at 6255.736 kb on - strand, within BT4773 at 6255.736 kb on - strand, within BT4773 at 6255.736 kb on - strand, within BT4773 at 6255.736 kb on - strand, within BT4773 at 6255.871 kb on - strand at 6255.871 kb on - strand at 6255.875 kb on + strand at 6255.876 kb on - strand at 6255.878 kb on + strand at 6255.878 kb on + strand at 6255.882 kb on - strand at 6255.882 kb on - strand at 6255.888 kb on - strand at 6255.954 kb on + strand at 6256.486 kb on - strand, within BT4774 at 6256.562 kb on - strand, within BT4774 at 6256.688 kb on - strand at 6256.688 kb on - strand, within BT4774 at 6256.688 kb on - strand, within BT4774
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen remove 6,254,626 + -1.5 6,254,627 - -0.5 6,254,737 - -0.1 6,254,777 - -0.6 6,254,786 - -0.7 6,255,036 - BT4771 0.37 +1.8 6,255,187 - -1.2 6,255,245 - BT4772 0.20 -0.1 6,255,469 + -3.3 6,255,736 - BT4773 0.66 -0.1 6,255,736 - BT4773 0.66 -1.1 6,255,736 - BT4773 0.66 -4.3 6,255,736 - BT4773 0.66 -2.7 6,255,871 - +0.5 6,255,871 - -2.9 6,255,875 + -0.1 6,255,876 - -1.1 6,255,878 + -0.6 6,255,878 + -0.6 6,255,882 - -1.7 6,255,882 - -0.8 6,255,888 - -0.8 6,255,954 + -0.9 6,256,486 - BT4774 0.61 -3.9 6,256,562 - BT4774 0.68 -1.1 6,256,688 - -2.1 6,256,688 - BT4774 0.81 -1.1 6,256,688 - BT4774 0.81 +2.3
Or see this region's nucleotide sequence