Experiment: L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0440 and BT0441 are separated by 9 nucleotides BT0441 and BT0442 are separated by 17 nucleotides
BT0440: BT0440 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 533,139 to 535,022
BT0440
BT0441: BT0441 - hypothetical protein (NCBI ptt file), at 535,032 to 536,420
BT0441
BT0442: BT0442 - glycerophosphoryl diester phosphodiesterase (NCBI ptt file), at 536,438 to 538,213
BT0442
Position (kb) 535
536
537 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 534.092 kb on + strand, within BT0440 at 534.112 kb on + strand, within BT0440 at 534.126 kb on + strand, within BT0440 at 534.196 kb on + strand, within BT0440 at 534.200 kb on + strand, within BT0440 at 534.265 kb on + strand, within BT0440 at 534.356 kb on + strand, within BT0440 at 534.439 kb on + strand, within BT0440 at 534.449 kb on + strand, within BT0440 at 534.511 kb on - strand, within BT0440 at 534.513 kb on - strand, within BT0440 at 534.669 kb on - strand, within BT0440 at 534.998 kb on + strand at 535.025 kb on - strand at 535.030 kb on + strand at 535.104 kb on - strand at 535.131 kb on - strand at 535.158 kb on - strand at 535.161 kb on + strand at 535.285 kb on - strand, within BT0441 at 535.285 kb on - strand, within BT0441 at 535.332 kb on + strand, within BT0441 at 535.333 kb on - strand, within BT0441 at 535.519 kb on + strand, within BT0441 at 535.519 kb on + strand, within BT0441 at 535.526 kb on + strand, within BT0441 at 535.702 kb on - strand, within BT0441 at 535.704 kb on - strand, within BT0441 at 535.775 kb on - strand, within BT0441 at 535.849 kb on - strand, within BT0441 at 535.863 kb on + strand, within BT0441 at 535.863 kb on + strand, within BT0441 at 535.864 kb on - strand, within BT0441 at 535.868 kb on - strand, within BT0441 at 535.883 kb on + strand, within BT0441 at 535.884 kb on - strand, within BT0441 at 535.904 kb on + strand, within BT0441 at 535.907 kb on - strand, within BT0441 at 535.941 kb on - strand, within BT0441 at 535.985 kb on - strand, within BT0441 at 536.146 kb on - strand, within BT0441 at 536.358 kb on - strand at 536.371 kb on - strand at 536.422 kb on + strand at 536.461 kb on - strand at 536.491 kb on + strand at 536.492 kb on - strand at 536.492 kb on - strand at 536.498 kb on - strand at 536.498 kb on - strand at 536.520 kb on + strand at 536.524 kb on + strand at 536.567 kb on + strand at 536.618 kb on + strand, within BT0442 at 536.721 kb on - strand, within BT0442 at 536.764 kb on - strand, within BT0442 at 536.865 kb on + strand, within BT0442 at 536.865 kb on + strand, within BT0442 at 536.869 kb on - strand, within BT0442 at 536.869 kb on - strand, within BT0442 at 536.985 kb on + strand, within BT0442 at 537.091 kb on + strand, within BT0442 at 537.092 kb on - strand, within BT0442 at 537.188 kb on + strand, within BT0442 at 537.189 kb on - strand, within BT0442 at 537.348 kb on - strand, within BT0442 at 537.348 kb on - strand, within BT0442 at 537.349 kb on + strand, within BT0442 at 537.399 kb on - strand, within BT0442
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen remove 534,092 + BT0440 0.51 -1.1 534,112 + BT0440 0.52 +0.9 534,126 + BT0440 0.52 -1.6 534,196 + BT0440 0.56 -2.6 534,200 + BT0440 0.56 -1.5 534,265 + BT0440 0.60 -0.6 534,356 + BT0440 0.65 +0.4 534,439 + BT0440 0.69 -0.1 534,449 + BT0440 0.70 -0.1 534,511 - BT0440 0.73 -0.1 534,513 - BT0440 0.73 -0.8 534,669 - BT0440 0.81 -1.6 534,998 + -0.1 535,025 - -1.3 535,030 + +1.5 535,104 - -0.5 535,131 - -3.4 535,158 - +0.7 535,161 + -2.6 535,285 - BT0441 0.18 -2.9 535,285 - BT0441 0.18 -1.6 535,332 + BT0441 0.22 -1.6 535,333 - BT0441 0.22 -1.6 535,519 + BT0441 0.35 -3.2 535,519 + BT0441 0.35 -1.1 535,526 + BT0441 0.36 -0.1 535,702 - BT0441 0.48 -3.2 535,704 - BT0441 0.48 -1.6 535,775 - BT0441 0.53 -2.3 535,849 - BT0441 0.59 -0.1 535,863 + BT0441 0.60 +1.5 535,863 + BT0441 0.60 -0.1 535,864 - BT0441 0.60 -0.1 535,868 - BT0441 0.60 +3.5 535,883 + BT0441 0.61 -1.6 535,884 - BT0441 0.61 +0.5 535,904 + BT0441 0.63 -2.1 535,907 - BT0441 0.63 -2.9 535,941 - BT0441 0.65 +0.5 535,985 - BT0441 0.69 -0.1 536,146 - BT0441 0.80 -1.6 536,358 - -1.6 536,371 - -3.1 536,422 + -1.1 536,461 - -2.1 536,491 + -2.8 536,492 - +0.9 536,492 - -0.5 536,498 - +0.7 536,498 - +0.9 536,520 + -2.4 536,524 + -1.4 536,567 + -2.2 536,618 + BT0442 0.10 -0.1 536,721 - BT0442 0.16 -1.7 536,764 - BT0442 0.18 -1.7 536,865 + BT0442 0.24 +0.9 536,865 + BT0442 0.24 -1.7 536,869 - BT0442 0.24 -4.5 536,869 - BT0442 0.24 -2.4 536,985 + BT0442 0.31 +1.7 537,091 + BT0442 0.37 -0.1 537,092 - BT0442 0.37 -0.1 537,188 + BT0442 0.42 -1.5 537,189 - BT0442 0.42 -0.5 537,348 - BT0442 0.51 -0.8 537,348 - BT0442 0.51 -1.1 537,349 + BT0442 0.51 -3.8 537,399 - BT0442 0.54 -0.6
Or see this region's nucleotide sequence