Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2980

Experiment: L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
3,757,049	+				+2.0
3,757,120	-		BT2979	0.29	+2.8
3,757,130	+		BT2979	0.32	+1.6
3,757,131	-		BT2979	0.32	+1.5
3,757,133	+		BT2979	0.33	-1.0
3,757,134	-		BT2979	0.33	+2.6
3,757,167	+		BT2979	0.44	-0.9
3,757,170	+		BT2979	0.45	+0.2
3,757,236	+		BT2979	0.66	+0.4
3,757,236	+		BT2979	0.66	+0.4
3,757,237	-		BT2979	0.66	+1.0
3,757,353	+				+0.4
3,757,353	+				+0.3
3,757,354	-				+1.5
3,757,373	-				-0.0
3,757,383	+				-0.7
3,757,383	+				-0.0
3,757,383	+				-0.4
3,757,391	+				-0.2
3,757,539	+				-0.0
3,757,570	+				-0.0
3,757,570	+				+0.4
3,757,572	+				-0.0
3,757,573	-				+1.0
3,757,597	-				-0.4
3,757,597	-				+0.6
3,757,608	-				+0.3
3,757,622	+				-1.0
3,757,638	-				-0.0
3,757,648	+				-1.6
3,757,648	+				-0.3
3,757,652	-				+0.3
3,757,652	-				+0.2
3,757,664	-				+0.1
3,757,732	-				-0.0
3,757,753	-				-0.0
3,757,770	+				-0.7
3,757,785	+		BT2980	0.10	+0.3
3,757,789	+		BT2980	0.11	-0.8
3,757,789	+		BT2980	0.11	+0.6
3,757,789	+		BT2980	0.11	+2.0
3,757,790	-		BT2980	0.11	+1.6
3,757,822	+		BT2980	0.13	-0.4
3,757,823	-		BT2980	0.13	-0.6
3,757,823	-		BT2980	0.13	-2.0
3,757,823	-		BT2980	0.13	+1.6
3,757,834	-		BT2980	0.14	+0.4
3,757,834	-		BT2980	0.14	-0.0
3,757,837	+		BT2980	0.15	-0.0
3,757,853	+		BT2980	0.16	-0.6
3,757,853	+		BT2980	0.16	+1.0
3,757,870	-		BT2980	0.17	-0.0
3,757,882	-		BT2980	0.18	-0.8
3,757,882	-		BT2980	0.18	+2.0
3,757,911	+		BT2980	0.20	-2.6
3,757,911	+		BT2980	0.20	-1.2
3,757,912	-		BT2980	0.20	-0.2
3,757,962	+		BT2980	0.24	+0.4
3,757,983	+		BT2980	0.26	-0.0
3,757,984	-		BT2980	0.26	-1.0
3,757,990	+		BT2980	0.27	-0.9
3,757,991	-		BT2980	0.27	+1.0
3,757,993	+		BT2980	0.27	+0.6
3,758,016	-		BT2980	0.29	+0.6
3,758,016	-		BT2980	0.29	-0.0
3,758,050	-		BT2980	0.31	+1.6
3,758,054	-		BT2980	0.32	+1.7
3,758,071	-		BT2980	0.33	-1.3
3,758,071	-		BT2980	0.33	-1.0
3,758,078	-		BT2980	0.34	-1.2
3,758,085	+		BT2980	0.34	-2.3
3,758,085	+		BT2980	0.34	-0.0
3,758,162	-		BT2980	0.40	-0.4
3,758,236	+		BT2980	0.46	+1.2
3,758,264	-		BT2980	0.48	-1.3
3,758,305	+		BT2980	0.51	-0.0
3,758,305	+		BT2980	0.51	-1.0
3,758,306	-		BT2980	0.52	-0.8
3,758,317	+		BT2980	0.52	+0.4
3,758,374	+		BT2980	0.57	-1.2
3,758,375	-		BT2980	0.57	-0.3
3,758,375	-		BT2980	0.57	-0.9
3,758,394	-		BT2980	0.58	-0.0
3,758,395	+		BT2980	0.59	-0.7
3,758,478	-		BT2980	0.65	-0.0
3,758,478	-		BT2980	0.65	+1.2
3,758,485	+		BT2980	0.66	+2.6
3,758,485	+		BT2980	0.66	-0.9
3,758,488	+		BT2980	0.66	-0.4
3,758,507	-		BT2980	0.67	+0.3
3,758,509	+		BT2980	0.68	-2.3
3,758,509	+		BT2980	0.68	-0.6
3,758,510	-		BT2980	0.68	+1.6
3,758,510	-		BT2980	0.68	-0.7
3,758,514	-		BT2980	0.68	+1.0
3,758,514	-		BT2980	0.68	+0.3
3,758,540	-		BT2980	0.70	-1.8
3,758,565	+		BT2980	0.72	-0.3
3,758,580	+		BT2980	0.73	-0.7
3,758,580	+		BT2980	0.73	-0.0
3,758,603	+		BT2980	0.75	-0.8
3,758,604	-		BT2980	0.75	-2.3
3,758,612	-		BT2980	0.76	+0.6
3,758,639	+		BT2980	0.78	+1.6
3,758,668	+		BT2980	0.80	-1.4
3,758,668	+		BT2980	0.80	-0.7
3,758,669	-		BT2980	0.80	-0.1
3,758,718	+		BT2980	0.84	-1.4
3,758,732	+		BT2980	0.85	-0.0
3,758,735	+		BT2980	0.85	-1.2
3,758,735	+		BT2980	0.85	-0.0
3,758,736	-		BT2980	0.85	-1.8
3,758,736	-		BT2980	0.85	-0.6
3,758,736	-		BT2980	0.85	-0.5
3,758,759	-		BT2980	0.87	+0.6
3,758,759	-		BT2980	0.87	-1.3
3,758,784	+		BT2980	0.89	-2.8
3,758,793	-		BT2980	0.90	-1.6
3,758,793	-		BT2980	0.90	+0.3
3,758,794	+				-1.6
3,758,794	+				-1.5
3,758,794	+				+0.6
3,758,795	-				-0.0
3,758,813	-				+1.8
3,758,820	+				-1.5
3,758,821	-				+2.0
3,758,849	+				-1.6
3,758,869	-				+1.3
3,758,904	-				-0.0
3,758,915	-				+0.5
3,758,918	+				+0.7
3,758,919	-				+1.0
3,758,926	+				+0.5
3,758,927	-				-0.0
3,758,960	+				-2.3
3,758,983	+				-0.5
3,758,999	-				-1.0
3,759,007	+				-0.5
3,759,023	+				-2.0
3,759,023	+				-1.3
3,759,028	-				-1.1
3,759,055	+				-1.1
3,759,056	-				-1.4
3,759,080	-				-0.9
3,759,101	-		BT2981	0.12	-2.3
3,759,106	-		BT2981	0.12	-0.0
3,759,145	+		BT2981	0.17	-0.5
3,759,172	+		BT2981	0.20	-0.7
3,759,182	+		BT2981	0.21	-1.6
3,759,188	-		BT2981	0.22	-0.7
3,759,218	+				-2.0
3,759,246	-		BT2981	0.28	+0.1
3,759,249	-		BT2981	0.29	-0.0
3,759,253	+		BT2981	0.29	-1.9
3,759,253	+		BT2981	0.29	-1.4
3,759,253	+		BT2981	0.29	-1.6
3,759,253	+		BT2981	0.29	-0.7
3,759,314	+		BT2981	0.36	+0.6
3,759,318	+		BT2981	0.37	+0.6
3,759,318	+		BT2981	0.37	-2.1
3,759,319	-		BT2981	0.37	+1.3
3,759,381	+		BT2981	0.44	-0.3
3,759,381	+		BT2981	0.44	-0.8
3,759,381	+		BT2981	0.44	-0.0
3,759,382	-		BT2981	0.44	+1.0
3,759,382	-		BT2981	0.44	-0.4
3,759,383	+		BT2981	0.44	-0.3
3,759,392	-		BT2981	0.45	-0.6
3,759,394	+		BT2981	0.46	+0.4
3,759,394	+		BT2981	0.46	-0.3
3,759,395	-		BT2981	0.46	-0.2
3,759,453	-		BT2981	0.52	-1.2
3,759,456	+		BT2981	0.53	-1.2
3,759,457	-		BT2981	0.53	-0.3
3,759,488	-		BT2981	0.56	+1.6
3,759,493	+		BT2981	0.57	+0.6
3,759,493	+		BT2981	0.57	-1.5
3,759,494	-		BT2981	0.57	+2.3
3,759,494	-		BT2981	0.57	+0.2
3,759,502	-		BT2981	0.58	-0.0
3,759,549	+		BT2981	0.63	+0.7
3,759,560	+		BT2981	0.65	-0.7
3,759,607	+		BT2981	0.70	-0.6
3,759,608	-		BT2981	0.70	-1.0
3,759,682	+		BT2981	0.79	-0.4
3,759,706	-		BT2981	0.82	-1.0
3,759,723	+		BT2981	0.84	+0.3
3,759,724	-		BT2981	0.84	+1.6
3,759,730	-		BT2981	0.84	+0.6
3,759,738	+		BT2981	0.85	-0.6
3,759,738	+		BT2981	0.85	+1.0
3,759,739	-		BT2981	0.85	-1.4
3,759,739	-		BT2981	0.85	+1.6
3,759,749	-		BT2981	0.87	-0.9
3,759,749	-		BT2981	0.87	-0.8
3,759,753	+		BT2981	0.87	-1.4
3,759,756	+		BT2981	0.87	-0.0
3,759,757	-		BT2981	0.87	-1.0
3,759,757	-		BT2981	0.87	-1.1
3,759,774	-		BT2981	0.89	-1.3
3,759,774	-		BT2981	0.89	-1.0
3,759,781	+				-0.9
3,759,799	+				-1.4
3,759,838	+				-1.9
3,759,839	-				-1.3
3,759,841	+				-1.0
3,759,841	+				-0.7
3,759,842	-				-0.9
3,759,863	+				-1.1
3,759,908	+				-1.2
3,759,909	-				+1.0
3,759,909	-				-0.1
3,759,913	-				-0.0