Experiment: Beta-Lactose 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0212 and BT0213 are separated by 12 nucleotides BT0213 and BT0214 are separated by 21 nucleotides BT0214 and BT0215 are separated by 188 nucleotides
BT0212: BT0212 - protease (NCBI ptt file), at 234,898 to 236,985
BT0212
BT0213: BT0213 - hypothetical protein (NCBI ptt file), at 236,998 to 237,813
BT0213
BT0214: BT0214 - hypothetical protein (NCBI ptt file), at 237,835 to 238,311
BT0214
BT0215: BT0215 - iron uptake regulatory protein (NCBI ptt file), at 238,500 to 238,928
BT0215
Position (kb) 236
237
238 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 236.032 kb on + strand, within BT0212 at 236.217 kb on + strand, within BT0212 at 236.261 kb on - strand, within BT0212 at 236.262 kb on + strand, within BT0212 at 236.263 kb on - strand, within BT0212 at 236.431 kb on - strand, within BT0212 at 236.437 kb on - strand, within BT0212 at 236.482 kb on + strand, within BT0212 at 236.482 kb on + strand, within BT0212 at 236.593 kb on + strand, within BT0212 at 236.701 kb on - strand, within BT0212 at 236.727 kb on - strand, within BT0212 at 236.737 kb on - strand, within BT0212 at 236.740 kb on + strand, within BT0212 at 236.741 kb on - strand, within BT0212 at 236.804 kb on + strand at 236.805 kb on - strand at 236.810 kb on - strand at 236.829 kb on + strand at 236.940 kb on + strand at 236.964 kb on + strand at 236.992 kb on + strand at 237.033 kb on - strand at 237.039 kb on - strand at 237.145 kb on - strand, within BT0213 at 237.228 kb on + strand, within BT0213 at 237.233 kb on + strand, within BT0213 at 237.234 kb on - strand, within BT0213 at 237.234 kb on - strand, within BT0213 at 237.271 kb on - strand, within BT0213 at 237.311 kb on + strand, within BT0213 at 237.347 kb on - strand, within BT0213 at 237.437 kb on + strand, within BT0213 at 237.444 kb on + strand, within BT0213 at 237.445 kb on - strand, within BT0213 at 237.485 kb on - strand, within BT0213 at 237.688 kb on - strand, within BT0213 at 237.692 kb on + strand, within BT0213 at 237.745 kb on - strand at 237.747 kb on + strand at 237.804 kb on + strand at 237.804 kb on + strand at 237.807 kb on + strand at 237.818 kb on - strand at 238.003 kb on + strand, within BT0214 at 238.010 kb on - strand, within BT0214 at 238.010 kb on - strand, within BT0214 at 238.013 kb on + strand, within BT0214 at 238.014 kb on - strand, within BT0214 at 238.020 kb on + strand, within BT0214 at 238.115 kb on - strand, within BT0214 at 238.124 kb on - strand, within BT0214 at 238.233 kb on + strand, within BT0214 at 238.249 kb on + strand, within BT0214 at 238.294 kb on - strand at 238.325 kb on + strand at 238.327 kb on + strand at 238.328 kb on - strand at 238.351 kb on - strand at 238.389 kb on - strand at 238.392 kb on + strand at 238.393 kb on - strand at 238.607 kb on + strand, within BT0215
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 2.5 mg/ml (C) remove 236,032 + BT0212 0.54 -0.7 236,217 + BT0212 0.63 -1.7 236,261 - BT0212 0.65 -2.1 236,262 + BT0212 0.65 -0.1 236,263 - BT0212 0.65 -2.1 236,431 - BT0212 0.73 -0.1 236,437 - BT0212 0.74 -2.4 236,482 + BT0212 0.76 -1.1 236,482 + BT0212 0.76 -0.1 236,593 + BT0212 0.81 -1.7 236,701 - BT0212 0.86 -0.8 236,727 - BT0212 0.88 -2.1 236,737 - BT0212 0.88 -0.1 236,740 + BT0212 0.88 -1.4 236,741 - BT0212 0.88 -0.5 236,804 + -1.1 236,805 - -1.1 236,810 - -1.2 236,829 + -0.5 236,940 + -1.1 236,964 + -0.7 236,992 + -1.1 237,033 - -1.3 237,039 - -1.3 237,145 - BT0213 0.18 -2.3 237,228 + BT0213 0.28 -1.4 237,233 + BT0213 0.29 -1.8 237,234 - BT0213 0.29 -1.5 237,234 - BT0213 0.29 -1.1 237,271 - BT0213 0.33 -1.9 237,311 + BT0213 0.38 -0.7 237,347 - BT0213 0.43 -0.7 237,437 + BT0213 0.54 -2.1 237,444 + BT0213 0.55 -2.1 237,445 - BT0213 0.55 -3.1 237,485 - BT0213 0.60 -2.7 237,688 - BT0213 0.85 -1.1 237,692 + BT0213 0.85 -1.9 237,745 - -0.3 237,747 + -1.2 237,804 + -0.1 237,804 + -0.1 237,807 + +0.6 237,818 - -1.1 238,003 + BT0214 0.35 -0.1 238,010 - BT0214 0.37 -1.1 238,010 - BT0214 0.37 -0.1 238,013 + BT0214 0.37 -3.4 238,014 - BT0214 0.38 -1.1 238,020 + BT0214 0.39 -0.1 238,115 - BT0214 0.59 -1.4 238,124 - BT0214 0.61 -1.1 238,233 + BT0214 0.83 -0.1 238,249 + BT0214 0.87 -1.7 238,294 - +0.9 238,325 + -1.7 238,327 + -2.3 238,328 - -1.3 238,351 - -1.7 238,389 - +0.9 238,392 + -1.9 238,393 - -0.8 238,607 + BT0215 0.25 -1.4
Or see this region's nucleotide sequence