Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4129

Experiment: Pectin from citrus peel; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from citrus peel; autoclaved 2.5 mg/ml (C)
5,412,516	-				-1.1
5,412,566	+				-1.4
5,412,609	+				-1.0
5,412,609	+				-1.3
5,412,609	+				+0.0
5,412,611	+				-1.8
5,412,613	+				-2.8
5,412,620	+				-1.3
5,412,620	+				-1.1
5,412,625	+				-0.7
5,412,626	-				-1.8
5,412,712	-		BT4128	0.12	+0.0
5,412,721	+		BT4128	0.13	-1.0
5,412,722	-		BT4128	0.13	-2.6
5,412,722	-		BT4128	0.13	+0.0
5,412,722	-		BT4128	0.13	-0.8
5,412,731	-		BT4128	0.15	-1.1
5,412,798	+		BT4128	0.26	-2.1
5,412,799	-		BT4128	0.26	-0.7
5,412,800	+		BT4128	0.26	-0.6
5,412,824	+		BT4128	0.30	+0.0
5,412,824	+		BT4128	0.30	+1.0
5,412,825	-		BT4128	0.30	+0.0
5,412,843	+		BT4128	0.33	-1.0
5,412,846	+		BT4128	0.33	-1.3
5,412,847	-		BT4128	0.34	+0.0
5,412,985	-		BT4128	0.56	-1.6
5,412,985	-		BT4128	0.56	-1.3
5,413,042	+		BT4128	0.65	-1.0
5,413,042	+		BT4128	0.65	+0.6
5,413,043	-		BT4128	0.66	-1.0
5,413,049	+		BT4128	0.67	-1.4
5,413,148	+		BT4128	0.83	-1.8
5,413,148	+		BT4128	0.83	-0.1
5,413,155	+		BT4128	0.84	-2.3
5,413,156	-		BT4128	0.84	+0.0
5,413,167	-		BT4128	0.86	+0.0
5,413,254	+				+0.0
5,413,255	-				-1.6
5,413,599	-		BT4129	0.13	-1.7
5,413,600	+		BT4129	0.13	-1.6
5,413,600	+		BT4129	0.13	-0.5
5,413,601	-		BT4129	0.13	+1.0
5,413,875	-		BT4129	0.24	-1.1
5,413,909	+		BT4129	0.25	-1.0
5,413,909	+		BT4129	0.25	-2.3
5,413,910	-		BT4129	0.25	-2.0
5,413,985	-		BT4129	0.28	-2.0
5,414,015	+		BT4129	0.30	-1.0
5,414,043	+		BT4129	0.31	-1.6
5,414,044	-		BT4129	0.31	-1.3
5,414,044	-		BT4129	0.31	+0.2
5,414,063	+		BT4129	0.31	-0.6
5,414,064	-		BT4129	0.31	-0.5
5,414,078	+		BT4129	0.32	-0.4
5,414,079	-		BT4129	0.32	+0.0
5,414,079	-		BT4129	0.32	-1.3
5,414,251	+		BT4129	0.39	+0.6
5,414,289	-		BT4129	0.40	-1.6
5,414,311	+		BT4129	0.41	-2.0
5,414,432	+		BT4129	0.46	+0.0
5,414,494	+		BT4129	0.49	-0.4
5,414,495	-		BT4129	0.49	+1.0
5,414,498	+		BT4129	0.49	-1.4
5,414,510	+		BT4129	0.49	-2.6
5,414,511	-		BT4129	0.49	-1.0
5,414,538	-		BT4129	0.50	+0.3
5,414,565	+		BT4129	0.51	-1.8
5,414,567	+		BT4129	0.51	-2.0
5,414,568	-		BT4129	0.51	+1.2
5,414,583	+		BT4129	0.52	-2.0
5,414,584	-		BT4129	0.52	-0.1
5,414,733	+		BT4129	0.58	+0.0
5,414,735	+		BT4129	0.58	-1.5
5,414,736	-		BT4129	0.58	-0.6
5,414,814	-		BT4129	0.61	-0.1
5,414,855	+		BT4129	0.63	-0.8
5,414,856	-		BT4129	0.63	+1.0
5,414,856	-		BT4129	0.63	-0.2
5,414,936	-		BT4129	0.66	-0.4
5,414,936	-		BT4129	0.66	-2.3
5,414,958	+		BT4129	0.67	-1.0
5,414,984	+		BT4129	0.68	-0.6
5,415,071	+		BT4129	0.71	-1.3
5,415,072	-		BT4129	0.72	-1.7
5,415,088	+		BT4129	0.72	-2.3
5,415,088	+		BT4129	0.72	-0.4
5,415,088	+		BT4129	0.72	-0.6
5,415,089	-		BT4129	0.72	-0.6
5,415,115	-		BT4129	0.73	-1.0
5,415,275	+		BT4129	0.80	+0.0
5,415,276	-		BT4129	0.80	-1.2
5,415,401	+		BT4129	0.85	-1.4
5,415,402	-		BT4129	0.85	+0.7
5,415,402	-		BT4129	0.85	+0.0
5,415,404	+		BT4129	0.85	-2.1
5,415,452	+		BT4129	0.87	+0.0
5,415,456	+		BT4129	0.87	-1.5
5,415,459	+		BT4129	0.87	-1.0
5,415,466	-		BT4129	0.87	+0.6
5,415,540	+				+1.0
5,415,692	+				+0.0
5,415,693	-				-1.1
5,415,699	+				-1.0
5,415,745	-				-0.4
5,415,761	+				+0.0
5,415,818	+				-0.4
5,415,818	+				-1.4
5,415,819	-				-0.7
5,415,835	+				-0.8
5,415,852	-				-0.2
5,415,859	+				-1.0
5,415,859	+				-1.3
5,415,859	+				-0.1
5,415,899	-				+0.0
5,415,906	+				+1.0
5,415,907	-				+0.0
5,415,952	-				+0.4
5,416,073	+				-1.0
5,416,105	+				+0.6
5,416,115	+		BT4130	0.10	+0.3
5,416,218	+		BT4130	0.15	+0.0
5,416,222	+		BT4130	0.16	-1.4
5,416,223	-		BT4130	0.16	+0.0
5,416,223	-		BT4130	0.16	+0.6
5,416,223	-		BT4130	0.16	+0.0
5,416,226	+		BT4130	0.16	+0.4
5,416,227	-		BT4130	0.16	-1.0
5,416,315	+		BT4130	0.20	-3.0
5,416,327	+		BT4130	0.21	-1.0
5,416,327	+		BT4130	0.21	-0.6
5,416,400	+		BT4130	0.25	-0.9
5,416,446	+		BT4130	0.27	-2.3
5,416,534	+		BT4130	0.31	-0.3
5,416,695	+		BT4130	0.39	+0.4
5,416,696	-		BT4130	0.39	-3.0
5,416,699	+		BT4130	0.40	+1.6
5,416,700	-		BT4130	0.40	-2.6
5,416,700	-		BT4130	0.40	-1.0