Experiment: polygalacturonic; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT4111 and BT4112 are separated by 928 nucleotides BT4112 and BT4113 are separated by 24 nucleotides
BT4111: BT4111 - two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file), at 5,375,810 to 5,380,345
BT4111
BT4112: BT4112 - hypothetical protein (NCBI ptt file), at 5,381,274 to 5,382,857
BT4112
BT4113: BT4113 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 5,382,882 to 5,384,741
BT4113
Position (kb) 5381
5382
5383 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 5380.373 kb on + strand at 5380.390 kb on - strand at 5380.520 kb on + strand at 5380.541 kb on + strand at 5380.555 kb on + strand at 5380.555 kb on + strand at 5380.556 kb on - strand at 5380.668 kb on - strand at 5380.706 kb on - strand at 5380.738 kb on - strand at 5380.782 kb on - strand at 5380.889 kb on - strand at 5380.919 kb on + strand at 5380.960 kb on - strand at 5381.003 kb on + strand at 5381.022 kb on - strand at 5381.043 kb on + strand at 5381.056 kb on + strand at 5381.098 kb on - strand at 5381.100 kb on - strand at 5381.142 kb on - strand at 5381.149 kb on + strand at 5381.150 kb on - strand at 5381.166 kb on - strand at 5381.192 kb on - strand at 5381.203 kb on + strand at 5381.240 kb on - strand at 5381.306 kb on + strand at 5381.311 kb on - strand at 5381.311 kb on - strand at 5381.311 kb on - strand at 5381.358 kb on - strand at 5381.424 kb on + strand at 5381.481 kb on - strand, within BT4112 at 5381.484 kb on - strand, within BT4112 at 5381.500 kb on - strand, within BT4112 at 5381.508 kb on - strand, within BT4112 at 5381.508 kb on - strand, within BT4112 at 5381.581 kb on + strand, within BT4112 at 5381.581 kb on + strand, within BT4112 at 5381.582 kb on - strand, within BT4112 at 5381.595 kb on - strand, within BT4112 at 5381.614 kb on + strand, within BT4112 at 5381.633 kb on + strand, within BT4112 at 5381.633 kb on + strand, within BT4112 at 5381.634 kb on - strand, within BT4112 at 5381.637 kb on + strand, within BT4112 at 5381.638 kb on - strand, within BT4112 at 5381.643 kb on - strand, within BT4112 at 5381.701 kb on + strand, within BT4112 at 5381.702 kb on - strand, within BT4112 at 5381.723 kb on + strand, within BT4112 at 5381.723 kb on + strand, within BT4112 at 5381.723 kb on + strand, within BT4112 at 5381.724 kb on - strand, within BT4112 at 5381.735 kb on + strand, within BT4112 at 5381.783 kb on + strand, within BT4112 at 5381.784 kb on - strand, within BT4112 at 5381.801 kb on + strand, within BT4112 at 5381.801 kb on + strand, within BT4112 at 5381.801 kb on + strand, within BT4112 at 5381.802 kb on - strand, within BT4112 at 5381.802 kb on - strand, within BT4112 at 5381.822 kb on + strand, within BT4112 at 5381.875 kb on - strand, within BT4112 at 5381.910 kb on - strand, within BT4112 at 5381.919 kb on + strand, within BT4112 at 5381.928 kb on - strand, within BT4112 at 5381.958 kb on - strand, within BT4112 at 5382.009 kb on - strand, within BT4112 at 5382.031 kb on + strand, within BT4112 at 5382.043 kb on - strand, within BT4112 at 5382.044 kb on + strand, within BT4112 at 5382.045 kb on - strand, within BT4112 at 5382.048 kb on - strand, within BT4112 at 5382.060 kb on + strand, within BT4112 at 5382.101 kb on + strand, within BT4112 at 5382.102 kb on - strand, within BT4112 at 5382.102 kb on - strand, within BT4112 at 5382.103 kb on + strand, within BT4112 at 5382.104 kb on - strand, within BT4112 at 5382.104 kb on - strand, within BT4112 at 5382.104 kb on - strand, within BT4112 at 5382.105 kb on + strand, within BT4112 at 5382.106 kb on - strand, within BT4112 at 5382.113 kb on + strand, within BT4112 at 5382.114 kb on - strand, within BT4112 at 5382.116 kb on + strand, within BT4112 at 5382.128 kb on + strand, within BT4112 at 5382.135 kb on + strand, within BT4112 at 5382.143 kb on + strand, within BT4112 at 5382.152 kb on + strand, within BT4112 at 5382.168 kb on + strand, within BT4112 at 5382.169 kb on - strand, within BT4112 at 5382.169 kb on - strand, within BT4112 at 5382.204 kb on + strand, within BT4112 at 5382.258 kb on - strand, within BT4112 at 5382.390 kb on - strand, within BT4112 at 5382.420 kb on + strand, within BT4112 at 5382.565 kb on - strand, within BT4112 at 5382.581 kb on - strand, within BT4112 at 5382.658 kb on + strand, within BT4112 at 5382.745 kb on - strand at 5382.745 kb on - strand at 5382.777 kb on + strand at 5382.778 kb on - strand at 5382.778 kb on - strand at 5382.780 kb on - strand at 5382.824 kb on + strand at 5382.844 kb on - strand at 5382.844 kb on - strand at 5382.883 kb on + strand at 5382.887 kb on + strand at 5382.949 kb on + strand at 5382.950 kb on - strand at 5382.955 kb on + strand at 5382.956 kb on - strand at 5382.980 kb on + strand at 5382.981 kb on - strand at 5382.988 kb on - strand at 5383.012 kb on + strand at 5383.017 kb on + strand at 5383.051 kb on + strand at 5383.102 kb on + strand, within BT4113 at 5383.102 kb on + strand, within BT4113 at 5383.177 kb on + strand, within BT4113 at 5383.178 kb on - strand, within BT4113 at 5383.179 kb on + strand, within BT4113 at 5383.179 kb on + strand, within BT4113 at 5383.180 kb on - strand, within BT4113 at 5383.180 kb on - strand, within BT4113 at 5383.229 kb on - strand, within BT4113 at 5383.235 kb on + strand, within BT4113 at 5383.235 kb on + strand, within BT4113 at 5383.241 kb on + strand, within BT4113 at 5383.358 kb on + strand, within BT4113 at 5383.358 kb on + strand, within BT4113 at 5383.359 kb on - strand, within BT4113 at 5383.397 kb on + strand, within BT4113 at 5383.398 kb on - strand, within BT4113 at 5383.471 kb on - strand, within BT4113 at 5383.501 kb on - strand, within BT4113 at 5383.520 kb on + strand, within BT4113 at 5383.520 kb on + strand, within BT4113 at 5383.522 kb on + strand, within BT4113 at 5383.522 kb on + strand, within BT4113 at 5383.523 kb on - strand, within BT4113 at 5383.601 kb on + strand, within BT4113 at 5383.605 kb on + strand, within BT4113 at 5383.656 kb on + strand, within BT4113 at 5383.656 kb on + strand, within BT4113 at 5383.706 kb on + strand, within BT4113 at 5383.741 kb on - strand, within BT4113 at 5383.743 kb on + strand, within BT4113 at 5383.778 kb on + strand, within BT4113 at 5383.782 kb on + strand, within BT4113 at 5383.816 kb on + strand, within BT4113 at 5383.821 kb on + strand, within BT4113 at 5383.821 kb on + strand, within BT4113 at 5383.821 kb on + strand, within BT4113 at 5383.853 kb on + strand, within BT4113
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic; autoclaved 2.5 mg/ml (C) remove 5,380,373 + -0.5 5,380,390 - -1.6 5,380,520 + -1.0 5,380,541 + -0.0 5,380,555 + -1.0 5,380,555 + -3.2 5,380,556 - -1.4 5,380,668 - -0.6 5,380,706 - -0.7 5,380,738 - -1.6 5,380,782 - -1.2 5,380,889 - -1.0 5,380,919 + -2.0 5,380,960 - -0.6 5,381,003 + +1.0 5,381,022 - -0.3 5,381,043 + -1.3 5,381,056 + -1.1 5,381,098 - -0.0 5,381,100 - -0.3 5,381,142 - -1.5 5,381,149 + -1.3 5,381,150 - +0.7 5,381,166 - -1.8 5,381,192 - +2.0 5,381,203 + -1.3 5,381,240 - -4.0 5,381,306 + -4.3 5,381,311 - -1.8 5,381,311 - -2.6 5,381,311 - -2.3 5,381,358 - -2.0 5,381,424 + +2.0 5,381,481 - BT4112 0.13 -0.0 5,381,484 - BT4112 0.13 -1.5 5,381,500 - BT4112 0.14 -0.2 5,381,508 - BT4112 0.15 -0.3 5,381,508 - BT4112 0.15 -0.0 5,381,581 + BT4112 0.19 -2.8 5,381,581 + BT4112 0.19 -2.0 5,381,582 - BT4112 0.19 -2.6 5,381,595 - BT4112 0.20 -0.2 5,381,614 + BT4112 0.21 -0.0 5,381,633 + BT4112 0.23 -1.1 5,381,633 + BT4112 0.23 -1.1 5,381,634 - BT4112 0.23 -1.9 5,381,637 + BT4112 0.23 -1.6 5,381,638 - BT4112 0.23 -0.9 5,381,643 - BT4112 0.23 -1.9 5,381,701 + BT4112 0.27 -1.0 5,381,702 - BT4112 0.27 -1.6 5,381,723 + BT4112 0.28 -3.0 5,381,723 + BT4112 0.28 -1.7 5,381,723 + BT4112 0.28 -1.7 5,381,724 - BT4112 0.28 -1.6 5,381,735 + BT4112 0.29 -1.0 5,381,783 + BT4112 0.32 -0.0 5,381,784 - BT4112 0.32 -1.7 5,381,801 + BT4112 0.33 -1.0 5,381,801 + BT4112 0.33 -2.3 5,381,801 + BT4112 0.33 -3.2 5,381,802 - BT4112 0.33 -1.1 5,381,802 - BT4112 0.33 -2.0 5,381,822 + BT4112 0.35 -1.6 5,381,875 - BT4112 0.38 -0.8 5,381,910 - BT4112 0.40 -1.0 5,381,919 + BT4112 0.41 -2.1 5,381,928 - BT4112 0.41 -0.6 5,381,958 - BT4112 0.43 -1.0 5,382,009 - BT4112 0.46 -1.0 5,382,031 + BT4112 0.48 -2.7 5,382,043 - BT4112 0.49 -0.0 5,382,044 + BT4112 0.49 -1.7 5,382,045 - BT4112 0.49 +0.6 5,382,048 - BT4112 0.49 -0.0 5,382,060 + BT4112 0.50 -2.6 5,382,101 + BT4112 0.52 -1.0 5,382,102 - BT4112 0.52 +3.0 5,382,102 - BT4112 0.52 -1.1 5,382,103 + BT4112 0.52 -2.8 5,382,104 - BT4112 0.52 -1.0 5,382,104 - BT4112 0.52 -2.2 5,382,104 - BT4112 0.52 -1.0 5,382,105 + BT4112 0.52 -1.8 5,382,106 - BT4112 0.53 -1.2 5,382,113 + BT4112 0.53 -2.3 5,382,114 - BT4112 0.53 -1.0 5,382,116 + BT4112 0.53 -1.8 5,382,128 + BT4112 0.54 -1.0 5,382,135 + BT4112 0.54 -1.0 5,382,143 + BT4112 0.55 -2.0 5,382,152 + BT4112 0.55 -2.0 5,382,168 + BT4112 0.56 -0.4 5,382,169 - BT4112 0.57 -0.0 5,382,169 - BT4112 0.57 -0.0 5,382,204 + BT4112 0.59 -0.0 5,382,258 - BT4112 0.62 -2.8 5,382,390 - BT4112 0.70 -0.0 5,382,420 + BT4112 0.72 -3.2 5,382,565 - BT4112 0.82 -2.3 5,382,581 - BT4112 0.83 -2.6 5,382,658 + BT4112 0.87 -4.4 5,382,745 - -4.5 5,382,745 - -2.0 5,382,777 + -0.0 5,382,778 - -0.0 5,382,778 - -0.0 5,382,780 - -0.4 5,382,824 + -2.0 5,382,844 - -3.5 5,382,844 - -2.3 5,382,883 + -4.8 5,382,887 + -5.0 5,382,949 + -3.3 5,382,950 - -4.0 5,382,955 + -2.6 5,382,956 - -1.0 5,382,980 + -2.6 5,382,981 - -1.0 5,382,988 - -3.2 5,383,012 + -2.0 5,383,017 + -1.0 5,383,051 + -0.0 5,383,102 + BT4113 0.12 -2.0 5,383,102 + BT4113 0.12 -1.0 5,383,177 + BT4113 0.16 -1.0 5,383,178 - BT4113 0.16 -0.6 5,383,179 + BT4113 0.16 -3.5 5,383,179 + BT4113 0.16 -4.4 5,383,180 - BT4113 0.16 -0.0 5,383,180 - BT4113 0.16 -3.5 5,383,229 - BT4113 0.19 -0.0 5,383,235 + BT4113 0.19 -1.6 5,383,235 + BT4113 0.19 -1.0 5,383,241 + BT4113 0.19 -4.8 5,383,358 + BT4113 0.26 -0.0 5,383,358 + BT4113 0.26 -0.0 5,383,359 - BT4113 0.26 -2.3 5,383,397 + BT4113 0.28 -1.3 5,383,398 - BT4113 0.28 -3.0 5,383,471 - BT4113 0.32 -1.0 5,383,501 - BT4113 0.33 -3.6 5,383,520 + BT4113 0.34 -1.6 5,383,520 + BT4113 0.34 -3.8 5,383,522 + BT4113 0.34 -3.0 5,383,522 + BT4113 0.34 -2.8 5,383,523 - BT4113 0.34 -2.8 5,383,601 + BT4113 0.39 -1.0 5,383,605 + BT4113 0.39 -3.5 5,383,656 + BT4113 0.42 -2.3 5,383,656 + BT4113 0.42 -3.0 5,383,706 + BT4113 0.44 -1.8 5,383,741 - BT4113 0.46 -2.5 5,383,743 + BT4113 0.46 -4.3 5,383,778 + BT4113 0.48 -1.0 5,383,782 + BT4113 0.48 -1.0 5,383,816 + BT4113 0.50 -0.0 5,383,821 + BT4113 0.50 -4.7 5,383,821 + BT4113 0.50 -1.0 5,383,821 + BT4113 0.50 -4.5 5,383,853 + BT4113 0.52 -2.3
Or see this region's nucleotide sequence