Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4059

Experiment: polygalacturonic; autoclaved 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT4058 and BT4059 are separated by 37 nucleotidesBT4059 and BT4060 are separated by 82 nucleotides BT4058: BT4058 - NADH dehydrogenase I, chain N (NCBI ptt file), at 5,290,993 to 5,292,435 BT4058 BT4059: BT4059 - NADH dehydrogenase I, chain M (NCBI ptt file), at 5,292,473 to 5,293,957 BT4059 BT4060: BT4060 - NADH dehydrogenase I, chain L (NCBI ptt file), at 5,294,040 to 5,295,971 BT4060 Position (kb) 5292 5293 5294Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5291.499 kb on + strand, within BT4058at 5291.499 kb on + strand, within BT4058at 5291.499 kb on + strand, within BT4058at 5291.501 kb on + strand, within BT4058at 5291.502 kb on - strand, within BT4058at 5291.563 kb on + strand, within BT4058at 5291.567 kb on - strand, within BT4058at 5291.609 kb on - strand, within BT4058at 5291.627 kb on - strand, within BT4058at 5291.627 kb on - strand, within BT4058at 5291.801 kb on - strand, within BT4058at 5291.801 kb on - strand, within BT4058at 5291.836 kb on - strand, within BT4058at 5291.836 kb on - strand, within BT4058at 5291.858 kb on + strand, within BT4058at 5291.879 kb on + strand, within BT4058at 5291.903 kb on - strand, within BT4058at 5291.936 kb on + strand, within BT4058at 5291.936 kb on + strand, within BT4058at 5291.936 kb on + strand, within BT4058at 5291.937 kb on - strand, within BT4058at 5291.969 kb on + strand, within BT4058at 5292.063 kb on - strand, within BT4058at 5292.063 kb on - strand, within BT4058at 5292.087 kb on + strand, within BT4058at 5292.088 kb on - strand, within BT4058at 5292.088 kb on - strand, within BT4058at 5292.088 kb on - strand, within BT4058at 5292.095 kb on + strand, within BT4058at 5292.096 kb on - strand, within BT4058at 5292.096 kb on - strand, within BT4058at 5292.120 kb on + strand, within BT4058at 5292.172 kb on + strand, within BT4058at 5292.208 kb on + strand, within BT4058at 5292.209 kb on - strand, within BT4058at 5292.212 kb on + strand, within BT4058at 5292.212 kb on + strand, within BT4058at 5292.212 kb on + strand, within BT4058at 5292.213 kb on - strand, within BT4058at 5292.213 kb on - strand, within BT4058at 5292.219 kb on - strand, within BT4058at 5292.223 kb on - strand, within BT4058at 5292.270 kb on + strand, within BT4058at 5292.270 kb on + strand, within BT4058at 5292.376 kb on + strandat 5292.415 kb on + strandat 5292.429 kb on - strandat 5292.453 kb on + strandat 5292.675 kb on + strand, within BT4059at 5292.675 kb on + strand, within BT4059at 5292.721 kb on + strand, within BT4059at 5292.755 kb on + strand, within BT4059at 5292.755 kb on + strand, within BT4059at 5292.828 kb on + strand, within BT4059at 5292.828 kb on + strand, within BT4059at 5292.828 kb on + strand, within BT4059at 5292.833 kb on + strand, within BT4059at 5292.833 kb on + strand, within BT4059at 5292.833 kb on + strand, within BT4059at 5292.834 kb on - strand, within BT4059at 5292.834 kb on - strand, within BT4059at 5292.851 kb on + strand, within BT4059at 5292.852 kb on - strand, within BT4059at 5292.852 kb on - strand, within BT4059at 5292.895 kb on + strand, within BT4059at 5292.895 kb on + strand, within BT4059at 5292.895 kb on + strand, within BT4059at 5293.124 kb on + strand, within BT4059at 5293.161 kb on + strand, within BT4059at 5293.162 kb on - strand, within BT4059at 5293.162 kb on - strand, within BT4059at 5293.205 kb on + strand, within BT4059at 5293.226 kb on + strand, within BT4059at 5293.348 kb on + strand, within BT4059at 5293.387 kb on + strand, within BT4059at 5293.454 kb on - strand, within BT4059at 5293.483 kb on + strand, within BT4059at 5293.483 kb on + strand, within BT4059at 5293.515 kb on + strand, within BT4059at 5293.516 kb on - strand, within BT4059at 5293.539 kb on + strand, within BT4059at 5293.540 kb on - strand, within BT4059at 5293.573 kb on + strand, within BT4059at 5293.594 kb on + strand, within BT4059at 5293.660 kb on + strand, within BT4059at 5293.670 kb on + strand, within BT4059at 5293.670 kb on + strand, within BT4059at 5293.670 kb on + strand, within BT4059at 5293.670 kb on + strand, within BT4059at 5293.688 kb on + strand, within BT4059at 5293.688 kb on + strand, within BT4059at 5293.750 kb on - strand, within BT4059at 5293.750 kb on - strand, within BT4059at 5293.750 kb on - strand, within BT4059at 5293.812 kb on + strandat 5293.826 kb on + strandat 5294.021 kb on - strandat 5294.034 kb on + strandat 5294.042 kb on - strandat 5294.089 kb on + strandat 5294.089 kb on + strandat 5294.089 kb on + strandat 5294.127 kb on + strandat 5294.184 kb on + strandat 5294.256 kb on + strand, within BT4060at 5294.256 kb on + strand, within BT4060at 5294.258 kb on + strand, within BT4060at 5294.258 kb on + strand, within BT4060at 5294.259 kb on - strand, within BT4060at 5294.267 kb on + strand, within BT4060at 5294.281 kb on + strand, within BT4060at 5294.348 kb on + strand, within BT4060at 5294.350 kb on + strand, within BT4060at 5294.379 kb on - strand, within BT4060at 5294.582 kb on + strand, within BT4060at 5294.583 kb on - strand, within BT4060at 5294.654 kb on - strand, within BT4060at 5294.705 kb on + strand, within BT4060at 5294.705 kb on + strand, within BT4060at 5294.706 kb on - strand, within BT4060at 5294.706 kb on - strand, within BT4060at 5294.706 kb on - strand, within BT4060at 5294.810 kb on + strand, within BT4060at 5294.810 kb on + strand, within BT4060at 5294.819 kb on - strand, within BT4060at 5294.819 kb on - strand, within BT4060at 5294.827 kb on - strand, within BT4060at 5294.895 kb on + strand, within BT4060at 5294.942 kb on + strand, within BT4060at 5294.942 kb on + strand, within BT4060at 5294.942 kb on + strand, within BT4060

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Per-strain Table

Position Strand Gene LocusTag Fraction polygalacturonic; autoclaved 2.5 mg/ml (C)
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5,291,499 + BT4058 0.35 -1.0
5,291,499 + BT4058 0.35 -2.1
5,291,499 + BT4058 0.35 -0.7
5,291,501 + BT4058 0.35 -2.0
5,291,502 - BT4058 0.35 -2.4
5,291,563 + BT4058 0.40 +2.0
5,291,567 - BT4058 0.40 -1.2
5,291,609 - BT4058 0.43 -1.9
5,291,627 - BT4058 0.44 -2.9
5,291,627 - BT4058 0.44 -1.8
5,291,801 - BT4058 0.56 -3.3
5,291,801 - BT4058 0.56 -0.7
5,291,836 - BT4058 0.58 -1.3
5,291,836 - BT4058 0.58 -1.0
5,291,858 + BT4058 0.60 -1.5
5,291,879 + BT4058 0.61 +0.7
5,291,903 - BT4058 0.63 -1.7
5,291,936 + BT4058 0.65 -1.6
5,291,936 + BT4058 0.65 -0.4
5,291,936 + BT4058 0.65 -0.0
5,291,937 - BT4058 0.65 -0.2
5,291,969 + BT4058 0.68 -1.0
5,292,063 - BT4058 0.74 -2.6
5,292,063 - BT4058 0.74 -0.7
5,292,087 + BT4058 0.76 -2.0
5,292,088 - BT4058 0.76 -2.2
5,292,088 - BT4058 0.76 -2.3
5,292,088 - BT4058 0.76 -0.0
5,292,095 + BT4058 0.76 -1.3
5,292,096 - BT4058 0.76 +1.6
5,292,096 - BT4058 0.76 +1.3
5,292,120 + BT4058 0.78 -2.9
5,292,172 + BT4058 0.82 -0.4
5,292,208 + BT4058 0.84 -0.0
5,292,209 - BT4058 0.84 -0.9
5,292,212 + BT4058 0.84 +1.6
5,292,212 + BT4058 0.84 -1.3
5,292,212 + BT4058 0.84 -3.0
5,292,213 - BT4058 0.85 -1.0
5,292,213 - BT4058 0.85 -0.4
5,292,219 - BT4058 0.85 -1.7
5,292,223 - BT4058 0.85 -0.0
5,292,270 + BT4058 0.88 -1.4
5,292,270 + BT4058 0.88 -0.0
5,292,376 + +1.3
5,292,415 + +1.2
5,292,429 - -0.6
5,292,453 + -1.0
5,292,675 + BT4059 0.14 -1.4
5,292,675 + BT4059 0.14 -0.0
5,292,721 + BT4059 0.17 -2.0
5,292,755 + BT4059 0.19 -2.1
5,292,755 + BT4059 0.19 -1.3
5,292,828 + BT4059 0.24 -1.3
5,292,828 + BT4059 0.24 -3.3
5,292,828 + BT4059 0.24 -2.0
5,292,833 + BT4059 0.24 -1.0
5,292,833 + BT4059 0.24 -1.3
5,292,833 + BT4059 0.24 -2.6
5,292,834 - BT4059 0.24 -0.3
5,292,834 - BT4059 0.24 -0.0
5,292,851 + BT4059 0.25 -0.7
5,292,852 - BT4059 0.26 -2.0
5,292,852 - BT4059 0.26 -2.3
5,292,895 + BT4059 0.28 -0.6
5,292,895 + BT4059 0.28 -1.6
5,292,895 + BT4059 0.28 +1.0
5,293,124 + BT4059 0.44 -0.3
5,293,161 + BT4059 0.46 -1.5
5,293,162 - BT4059 0.46 -2.0
5,293,162 - BT4059 0.46 -2.0
5,293,205 + BT4059 0.49 -2.3
5,293,226 + BT4059 0.51 -1.6
5,293,348 + BT4059 0.59 -1.6
5,293,387 + BT4059 0.62 -0.0
5,293,454 - BT4059 0.66 -1.6
5,293,483 + BT4059 0.68 +1.0
5,293,483 + BT4059 0.68 -1.0
5,293,515 + BT4059 0.70 -3.1
5,293,516 - BT4059 0.70 -3.5
5,293,539 + BT4059 0.72 -2.2
5,293,540 - BT4059 0.72 -2.3
5,293,573 + BT4059 0.74 -0.4
5,293,594 + BT4059 0.75 -1.2
5,293,660 + BT4059 0.80 -2.6
5,293,670 + BT4059 0.81 -0.0
5,293,670 + BT4059 0.81 -1.9
5,293,670 + BT4059 0.81 -1.6
5,293,670 + BT4059 0.81 -2.0
5,293,688 + BT4059 0.82 -1.4
5,293,688 + BT4059 0.82 -1.6
5,293,750 - BT4059 0.86 -2.0
5,293,750 - BT4059 0.86 -1.8
5,293,750 - BT4059 0.86 -0.6
5,293,812 + -2.7
5,293,826 + -2.3
5,294,021 - -1.0
5,294,034 + -0.0
5,294,042 - -0.0
5,294,089 + -0.3
5,294,089 + -1.3
5,294,089 + -1.6
5,294,127 + -0.4
5,294,184 + -2.0
5,294,256 + BT4060 0.11 -1.6
5,294,256 + BT4060 0.11 -0.2
5,294,258 + BT4060 0.11 -1.4
5,294,258 + BT4060 0.11 -1.1
5,294,259 - BT4060 0.11 -1.6
5,294,267 + BT4060 0.12 -0.4
5,294,281 + BT4060 0.12 -0.6
5,294,348 + BT4060 0.16 -1.5
5,294,350 + BT4060 0.16 -2.6
5,294,379 - BT4060 0.18 -0.2
5,294,582 + BT4060 0.28 -2.3
5,294,583 - BT4060 0.28 -1.6
5,294,654 - BT4060 0.32 -1.8
5,294,705 + BT4060 0.34 -2.3
5,294,705 + BT4060 0.34 -1.8
5,294,706 - BT4060 0.34 -2.0
5,294,706 - BT4060 0.34 -2.3
5,294,706 - BT4060 0.34 -1.3
5,294,810 + BT4060 0.40 -3.0
5,294,810 + BT4060 0.40 -0.0
5,294,819 - BT4060 0.40 -2.0
5,294,819 - BT4060 0.40 -1.6
5,294,827 - BT4060 0.41 -0.0
5,294,895 + BT4060 0.44 -1.6
5,294,942 + BT4060 0.47 -1.0
5,294,942 + BT4060 0.47 -0.0
5,294,942 + BT4060 0.47 -0.6

Or see this region's nucleotide sequence