Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2204

Experiment: polygalacturonic; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	polygalacturonic; autoclaved 2.5 mg/ml (C)
2,772,183	+		BT2203	0.23	-0.0
2,772,317	+		BT2203	0.37	-0.6
2,772,317	+		BT2203	0.37	-2.0
2,772,451	-		BT2203	0.51	-1.6
2,772,460	-		BT2203	0.52	+1.0
2,772,501	+		BT2203	0.56	-1.6
2,772,513	+		BT2203	0.58	+2.3
2,772,557	+		BT2203	0.62	-0.0
2,772,655	+		BT2203	0.73	-0.6
2,772,732	+		BT2203	0.81	-1.4
2,772,737	+		BT2203	0.81	-1.6
2,772,737	+		BT2203	0.81	-3.6
2,772,738	-		BT2203	0.81	-1.0
2,772,738	-		BT2203	0.81	-1.0
2,772,741	+		BT2203	0.82	-1.0
2,772,741	+		BT2203	0.82	-0.6
2,772,757	+		BT2203	0.83	+2.3
2,772,757	+		BT2203	0.83	-0.6
2,772,767	+		BT2203	0.84	-0.0
2,772,783	+		BT2203	0.86	-0.8
2,772,911	+				-1.0
2,772,912	-				-1.0
2,772,912	-				-1.0
2,772,930	+				-1.4
2,773,031	-				-1.0
2,773,033	+				+1.0
2,773,057	+				+0.4
2,773,058	-				-0.6
2,773,209	-				-1.0
2,773,213	+				-0.8
2,773,289	+				+1.0
2,773,308	-				+1.0
2,773,381	+				-0.0
2,773,381	+				-0.6
2,773,381	+				-1.0
2,773,385	+				-0.0
2,773,386	-				+1.0
2,773,386	-				-2.4
2,773,444	-		BT2204	0.11	-1.6
2,773,509	+		BT2204	0.14	-1.3
2,773,577	-		BT2204	0.16	-1.0
2,773,577	-		BT2204	0.16	-1.0
2,773,740	+		BT2204	0.22	-1.0
2,773,760	+		BT2204	0.23	-1.4
2,773,772	+		BT2204	0.24	-2.1
2,773,815	-		BT2204	0.25	-0.0
2,773,815	-		BT2204	0.25	-2.1
2,773,817	+		BT2204	0.25	-2.6
2,773,861	+		BT2204	0.27	-1.5
2,774,046	+		BT2204	0.34	-1.0
2,774,049	+		BT2204	0.34	-2.4
2,774,049	+		BT2204	0.34	-0.5
2,774,049	+		BT2204	0.34	+0.6
2,774,050	-		BT2204	0.35	+1.6
2,774,050	-		BT2204	0.35	-3.0
2,774,152	+		BT2204	0.39	-2.0
2,774,152	+		BT2204	0.39	-3.4
2,774,152	+		BT2204	0.39	-0.4
2,774,207	-		BT2204	0.41	-0.6
2,774,225	+		BT2204	0.41	-1.3
2,774,227	+		BT2204	0.41	-0.9
2,774,231	-		BT2204	0.42	+0.4
2,774,231	-		BT2204	0.42	-2.6
2,774,249	+		BT2204	0.42	-1.0
2,774,320	+		BT2204	0.45	-1.0
2,774,332	+		BT2204	0.45	-2.0
2,774,368	+		BT2204	0.47	-2.0
2,774,368	+		BT2204	0.47	-1.0
2,774,369	-		BT2204	0.47	-1.2
2,774,372	+		BT2204	0.47	-0.9
2,774,395	-		BT2204	0.48	-0.6
2,774,399	+		BT2204	0.48	-1.0
2,774,548	+		BT2204	0.54	-1.6
2,774,549	-		BT2204	0.54	-0.0
2,774,552	+		BT2204	0.54	-1.4
2,774,553	-		BT2204	0.54	-0.0
2,774,553	-		BT2204	0.54	-2.4
2,774,567	+		BT2204	0.55	-1.0
2,774,819	+		BT2204	0.64	-2.6
2,774,876	+				-0.2
2,774,926	+		BT2204	0.69	-1.0
2,774,927	-		BT2204	0.69	-1.3
2,774,933	-		BT2204	0.69	+0.6
2,774,963	-		BT2204	0.70	-1.3
2,775,047	-		BT2204	0.73	-1.3
2,775,071	-		BT2204	0.74	-2.0
2,775,131	+		BT2204	0.77	+0.4
2,775,170	+		BT2204	0.78	+1.0
2,775,171	-		BT2204	0.78	-2.0
2,775,172	+		BT2204	0.78	-0.2
2,775,173	-		BT2204	0.78	-1.0
2,775,173	-		BT2204	0.78	-2.6
2,775,275	+		BT2204	0.82	-1.0
2,775,437	+		BT2204	0.88	-0.6
2,775,450	-		BT2204	0.89	-0.6
2,775,473	+		BT2204	0.90	-0.0
2,775,473	+		BT2204	0.90	-2.0
2,775,479	+				-0.6
2,775,479	+				-1.0
2,775,479	+				-1.0
2,775,480	-				-0.8
2,775,485	+				-1.4
2,775,594	+				-1.0
2,775,595	-				-0.0
2,775,650	+				-2.0
2,775,708	+				-0.8
2,775,709	-				-0.0
2,775,729	+				-4.6
2,775,761	+				+1.0
2,775,888	+				-0.4
2,775,893	-				-0.0
2,775,899	+				-2.4
2,775,963	-				+1.6
2,775,967	-				+0.6
2,775,975	+				-1.4
2,775,976	-				-1.8
2,776,007	+				-1.3
2,776,069	+				-0.0
2,776,500	+				+0.6
2,776,514	+				-1.6
2,776,556	+				+0.1
2,776,622	+				-1.2
2,776,689	+		BT2206	0.10	+1.0
2,776,689	+		BT2206	0.10	-1.0