Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3686

Experiment: polygalacturonic; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	polygalacturonic; autoclaved 2.5 mg/ml (C)
4,788,597	+				-0.1
4,788,603	-				-1.6
4,788,642	-		BT3685	0.11	-1.1
4,788,642	-		BT3685	0.11	-1.1
4,788,687	+		BT3685	0.15	-1.2
4,788,755	+		BT3685	0.22	-0.1
4,788,773	-		BT3685	0.24	-2.1
4,788,796	+		BT3685	0.26	-1.6
4,788,897	+		BT3685	0.35	-1.6
4,788,915	-		BT3685	0.37	+0.9
4,788,915	-		BT3685	0.37	-0.1
4,788,937	+		BT3685	0.39	-1.5
4,788,937	+		BT3685	0.39	-1.2
4,788,952	-		BT3685	0.40	-0.4
4,788,973	+		BT3685	0.42	-1.4
4,789,090	+		BT3685	0.53	-1.9
4,789,093	-		BT3685	0.53	-0.7
4,789,119	+		BT3685	0.56	+0.9
4,789,119	+		BT3685	0.56	-2.4
4,789,120	-		BT3685	0.56	-0.7
4,789,120	-		BT3685	0.56	-0.1
4,789,120	-		BT3685	0.56	+1.5
4,789,120	-		BT3685	0.56	+0.5
4,789,120	-		BT3685	0.56	+0.5
4,789,121	+		BT3685	0.56	-0.1
4,789,121	-		BT3685	0.56	-1.0
4,789,143	+		BT3685	0.58	-1.4
4,789,167	-		BT3685	0.60	-0.3
4,789,230	+		BT3685	0.66	-1.6
4,789,232	+		BT3685	0.66	-1.5
4,789,238	-		BT3685	0.67	+0.4
4,789,238	-		BT3685	0.67	-0.1
4,789,304	+		BT3685	0.73	+0.7
4,789,322	+		BT3685	0.75	-1.6
4,789,322	+		BT3685	0.75	-2.9
4,789,323	-		BT3685	0.75	-1.0
4,789,323	-		BT3685	0.75	-0.7
4,789,323	-		BT3685	0.75	-0.9
4,789,332	-		BT3685	0.76	+0.7
4,789,378	+		BT3685	0.80	-1.1
4,789,379	-		BT3685	0.80	-1.4
4,789,379	-		BT3685	0.80	-1.1
4,789,407	+		BT3685	0.83	-1.1
4,789,410	-		BT3685	0.83	+1.5
4,789,458	+		BT3685	0.88	+0.0
4,789,458	+		BT3685	0.88	+0.3
4,789,463	-		BT3685	0.88	-1.1
4,789,463	-		BT3685	0.88	-1.6
4,789,463	-		BT3685	0.88	-0.7
4,789,463	-		BT3685	0.88	-1.5
4,789,481	-		BT3685	0.90	+0.9
4,789,493	+				-0.1
4,789,493	+				-1.3
4,789,493	+				+1.9
4,789,494	-				-1.0
4,789,494	-				-0.1
4,789,625	-				-0.6
4,789,682	+				-0.5
4,789,683	-				+0.4
4,789,688	+				+0.9
4,789,688	+				-1.6
4,789,689	-				-2.5
4,789,749	+		BT3686	0.12	-0.1
4,789,750	-		BT3686	0.12	+0.9
4,789,751	+		BT3686	0.12	-0.1
4,789,752	-		BT3686	0.12	-0.8
4,789,761	+		BT3686	0.13	-1.1
4,789,777	-		BT3686	0.14	+1.3
4,789,865	+		BT3686	0.21	+0.9
4,789,865	+		BT3686	0.21	+0.9
4,789,877	-		BT3686	0.22	-1.3
4,789,938	+		BT3686	0.27	-1.5
4,789,980	-		BT3686	0.30	-1.9
4,790,141	-		BT3686	0.42	+0.5
4,790,182	-		BT3686	0.45	+0.9
4,790,194	-		BT3686	0.46	-1.8
4,790,194	-		BT3686	0.46	-0.9
4,790,231	-		BT3686	0.49	-0.1
4,790,274	+		BT3686	0.53	-1.1
4,790,310	-		BT3686	0.55	+0.1
4,790,310	-		BT3686	0.55	-0.4
4,790,329	-		BT3686	0.57	-1.1
4,790,362	-		BT3686	0.59	-1.4
4,790,409	-		BT3686	0.63	-1.1
4,790,438	+		BT3686	0.65	-0.1
4,790,438	+		BT3686	0.65	-1.3
4,790,438	+		BT3686	0.65	-0.5
4,790,449	-		BT3686	0.66	-1.1
4,790,449	-		BT3686	0.66	-0.6
4,790,626	-		BT3686	0.80	-0.1
4,790,627	+		BT3686	0.80	-2.6
4,790,851	+				-0.1
4,790,851	+				-0.3
4,790,851	+				+1.5
4,790,852	-				-1.1
4,790,854	-				-1.0
4,790,854	-				-1.3
4,790,887	-				-2.6
4,790,892	+				-0.6
4,790,892	+				+0.1
4,790,905	+				-0.8
4,790,906	-				-0.1
4,791,006	+				-0.1
4,791,007	-				-0.7
4,791,098	-		BT3687	0.18	-0.9
4,791,153	+		BT3687	0.23	-0.7
4,791,154	-		BT3687	0.23	-1.6
4,791,184	-		BT3687	0.25	-0.6
4,791,206	-		BT3687	0.27	-0.4
4,791,223	+		BT3687	0.29	-2.4
4,791,227	+		BT3687	0.29	-0.1
4,791,274	+		BT3687	0.33	-1.1
4,791,291	+		BT3687	0.35	-0.1
4,791,297	+		BT3687	0.35	+0.4
4,791,297	+		BT3687	0.35	-1.0
4,791,297	+		BT3687	0.35	-0.6
4,791,298	-		BT3687	0.35	-0.1
4,791,298	-		BT3687	0.35	-0.1
4,791,298	-		BT3687	0.35	-2.1
4,791,298	-		BT3687	0.35	-1.6
4,791,378	-		BT3687	0.42	-0.1
4,791,379	+		BT3687	0.42	-0.8
4,791,379	+		BT3687	0.42	+0.4
4,791,381	+		BT3687	0.43	+0.4
4,791,381	+		BT3687	0.43	-0.6
4,791,382	-		BT3687	0.43	-0.4
4,791,386	+		BT3687	0.43	-0.1
4,791,409	+		BT3687	0.45	-0.1
4,791,410	-		BT3687	0.45	-0.1
4,791,411	+		BT3687	0.45	-1.4
4,791,433	+		BT3687	0.47	-1.2
4,791,455	-		BT3687	0.49	-1.1
4,791,455	-		BT3687	0.49	-1.6
4,791,474	+		BT3687	0.51	-0.1
4,791,474	+		BT3687	0.51	-2.1
4,791,474	+		BT3687	0.51	-1.1
4,791,475	-		BT3687	0.51	-1.6
4,791,475	-		BT3687	0.51	+1.5
4,791,482	-		BT3687	0.51	-2.3
4,791,520	+		BT3687	0.55	-1.9
4,791,524	+		BT3687	0.55	-1.5
4,791,526	+		BT3687	0.55	-0.1
4,791,633	+		BT3687	0.65	-0.1
4,791,633	+		BT3687	0.65	-1.7
4,791,634	-		BT3687	0.65	-1.1
4,791,650	-		BT3687	0.66	-1.1
4,791,654	-		BT3687	0.66	-1.1
4,791,667	-		BT3687	0.68	-0.6
4,791,720	+		BT3687	0.72	-0.1
4,791,721	-		BT3687	0.72	-2.0
4,791,721	-		BT3687	0.72	-1.1
4,791,721	-		BT3687	0.72	+1.7
4,791,723	+		BT3687	0.72	-1.1
4,791,723	+		BT3687	0.72	-2.4
4,791,723	+		BT3687	0.72	-0.5
4,791,724	-		BT3687	0.73	+0.9
4,791,840	-		BT3687	0.83	-0.4