Experiment: polygalacturonic; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0450 and BT0451 are separated by 19 nucleotides BT0451 and BT0452 are separated by 18 nucleotides
BT0450: BT0450 - conserved hypothetical protein (NCBI ptt file), at 548,886 to 550,583
BT0450
BT0451: BT0451 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 550,603 to 552,264
BT0451
BT0452: BT0452 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 552,283 to 555,507
BT0452
Position (kb) 550
551
552
553 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 549.614 kb on - strand, within BT0450 at 549.706 kb on - strand, within BT0450 at 549.752 kb on + strand, within BT0450 at 549.753 kb on - strand, within BT0450 at 549.753 kb on - strand, within BT0450 at 549.771 kb on - strand, within BT0450 at 549.800 kb on + strand, within BT0450 at 550.176 kb on - strand, within BT0450 at 550.238 kb on - strand, within BT0450 at 550.293 kb on - strand, within BT0450 at 550.298 kb on + strand, within BT0450 at 550.299 kb on - strand, within BT0450 at 550.299 kb on - strand, within BT0450 at 550.335 kb on - strand, within BT0450 at 550.353 kb on + strand, within BT0450 at 550.680 kb on + strand at 550.759 kb on - strand at 550.823 kb on + strand, within BT0451 at 550.838 kb on + strand, within BT0451 at 550.945 kb on - strand, within BT0451 at 551.038 kb on - strand, within BT0451 at 551.165 kb on + strand, within BT0451 at 551.244 kb on - strand, within BT0451 at 551.274 kb on + strand, within BT0451 at 551.316 kb on - strand, within BT0451 at 551.330 kb on - strand, within BT0451 at 551.373 kb on + strand, within BT0451 at 551.520 kb on + strand, within BT0451 at 551.521 kb on - strand, within BT0451 at 551.606 kb on + strand, within BT0451 at 551.737 kb on - strand, within BT0451 at 551.758 kb on + strand, within BT0451 at 551.774 kb on + strand, within BT0451 at 551.793 kb on + strand, within BT0451 at 551.795 kb on + strand, within BT0451 at 551.797 kb on + strand, within BT0451 at 551.797 kb on + strand, within BT0451 at 551.797 kb on + strand, within BT0451 at 551.912 kb on + strand, within BT0451 at 552.003 kb on + strand, within BT0451 at 552.104 kb on + strand at 552.197 kb on + strand at 552.204 kb on + strand at 552.205 kb on - strand at 552.205 kb on - strand at 552.264 kb on + strand at 552.332 kb on + strand at 552.332 kb on + strand at 552.409 kb on + strand at 552.465 kb on + strand at 552.465 kb on + strand at 552.465 kb on + strand at 552.497 kb on + strand at 552.529 kb on + strand at 552.604 kb on - strand at 552.623 kb on + strand, within BT0452 at 552.626 kb on - strand, within BT0452 at 552.785 kb on + strand, within BT0452 at 552.955 kb on + strand, within BT0452 at 552.970 kb on + strand, within BT0452 at 553.160 kb on + strand, within BT0452 at 553.165 kb on - strand, within BT0452 at 553.169 kb on + strand at 553.223 kb on + strand, within BT0452 at 553.224 kb on - strand, within BT0452 at 553.229 kb on + strand, within BT0452 at 553.230 kb on - strand, within BT0452 at 553.236 kb on + strand, within BT0452
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic; autoclaved 2.5 mg/ml (C) remove 549,614 - BT0450 0.43 +0.2 549,706 - BT0450 0.48 +1.6 549,752 + BT0450 0.51 -1.0 549,753 - BT0450 0.51 -2.0 549,753 - BT0450 0.51 -1.0 549,771 - BT0450 0.52 -0.7 549,800 + BT0450 0.54 +1.0 550,176 - BT0450 0.76 +0.6 550,238 - BT0450 0.80 -2.6 550,293 - BT0450 0.83 +0.0 550,298 + BT0450 0.83 -1.7 550,299 - BT0450 0.83 +0.0 550,299 - BT0450 0.83 -1.7 550,335 - BT0450 0.85 +1.0 550,353 + BT0450 0.86 -0.6 550,680 + +0.0 550,759 - +0.0 550,823 + BT0451 0.13 +0.4 550,838 + BT0451 0.14 -1.0 550,945 - BT0451 0.21 -1.5 551,038 - BT0451 0.26 -2.0 551,165 + BT0451 0.34 +0.0 551,244 - BT0451 0.39 -0.9 551,274 + BT0451 0.40 -0.5 551,316 - BT0451 0.43 -2.5 551,330 - BT0451 0.44 -2.0 551,373 + BT0451 0.46 -0.8 551,520 + BT0451 0.55 +0.0 551,521 - BT0451 0.55 -2.8 551,606 + BT0451 0.60 -1.1 551,737 - BT0451 0.68 -2.0 551,758 + BT0451 0.69 -2.3 551,774 + BT0451 0.70 -1.9 551,793 + BT0451 0.72 +0.0 551,795 + BT0451 0.72 -1.2 551,797 + BT0451 0.72 -1.0 551,797 + BT0451 0.72 +0.0 551,797 + BT0451 0.72 -3.0 551,912 + BT0451 0.79 -2.9 552,003 + BT0451 0.84 +0.0 552,104 + +0.0 552,197 + -1.6 552,204 + -0.3 552,205 - -1.5 552,205 - +1.0 552,264 + -2.1 552,332 + -0.4 552,332 + -1.0 552,409 + +0.0 552,465 + +0.0 552,465 + +0.5 552,465 + +0.0 552,497 + -1.5 552,529 + +1.0 552,604 - +0.0 552,623 + BT0452 0.11 -1.0 552,626 - BT0452 0.11 -0.5 552,785 + BT0452 0.16 -2.4 552,955 + BT0452 0.21 -2.6 552,970 + BT0452 0.21 +0.0 553,160 + BT0452 0.27 -1.6 553,165 - BT0452 0.27 -1.1 553,169 + +0.0 553,223 + BT0452 0.29 -1.0 553,224 - BT0452 0.29 -1.0 553,229 + BT0452 0.29 -1.0 553,230 - BT0452 0.29 +0.0 553,236 + BT0452 0.30 +0.0
Or see this region's nucleotide sequence