Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3542

Experiment: Rhamnogalacturonan - from potato; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan - from potato; autoclaved 2.5 mg/ml (C)
4,578,131	+				-1.4
4,578,132	-				-3.3
4,578,184	-				-0.8
4,578,192	+				-1.7
4,578,192	+				+0.6
4,578,249	+				+0.3
4,578,265	-				-1.7
4,578,293	+				-0.1
4,578,450	-		BT3541	0.20	-1.3
4,578,460	-		BT3541	0.22	-1.5
4,578,487	+		BT3541	0.30	-2.5
4,578,487	+		BT3541	0.30	-1.0
4,578,487	+		BT3541	0.30	-0.6
4,578,535	+		BT3541	0.44	-0.6
4,578,535	+		BT3541	0.44	+0.9
4,578,537	+		BT3541	0.45	-1.8
4,578,564	+		BT3541	0.52	-1.7
4,578,568	+		BT3541	0.53	-1.0
4,578,569	-		BT3541	0.54	-0.9
4,578,573	+		BT3541	0.55	-3.3
4,578,644	-		BT3541	0.75	-0.8
4,578,644	-		BT3541	0.75	-0.2
4,578,684	+		BT3541	0.87	+0.9
4,578,684	+		BT3541	0.87	-1.7
4,578,685	-		BT3541	0.87	-1.3
4,578,707	-				-1.4
4,578,728	-				-1.7
4,578,793	+				+0.5
4,578,794	-				+0.2
4,578,847	-				+0.9
4,578,859	+				-1.1
4,578,970	-				+0.3
4,579,033	-				-0.7
4,579,158	+				-0.1
4,579,162	+				+2.1
4,579,163	-				-1.2
4,579,163	-				-0.7
4,579,169	+				-1.1
4,579,175	-				-0.1
4,579,175	-				-2.1
4,579,242	-		BT3542	0.11	-0.7
4,579,279	-		BT3542	0.14	+0.6
4,579,312	-		BT3542	0.17	-0.2
4,579,343	+		BT3542	0.20	-0.0
4,579,344	-		BT3542	0.20	-1.4
4,579,360	+		BT3542	0.21	-0.1
4,579,361	-		BT3542	0.21	-0.4
4,579,408	+		BT3542	0.25	-1.1
4,579,410	+		BT3542	0.25	-2.9
4,579,411	-		BT3542	0.25	-1.7
4,579,411	-		BT3542	0.25	-0.1
4,579,439	-		BT3542	0.28	-0.4
4,579,443	-		BT3542	0.28	-0.7
4,579,443	-		BT3542	0.28	-0.1
4,579,520	+		BT3542	0.34	-0.8
4,579,521	-		BT3542	0.35	+0.1
4,579,521	-		BT3542	0.35	-1.9
4,579,521	-		BT3542	0.35	+1.5
4,579,596	-		BT3542	0.41	+1.1
4,579,702	-		BT3542	0.50	+0.9
4,579,702	-		BT3542	0.50	-1.1
4,579,702	-		BT3542	0.50	-0.8
4,579,728	+		BT3542	0.52	-0.7
4,579,763	-		BT3542	0.55	+0.3
4,579,843	-		BT3542	0.61	-0.5
4,579,843	-		BT3542	0.61	-0.5
4,579,845	-		BT3542	0.62	-0.7
4,579,867	-		BT3542	0.63	-2.0
4,579,870	-		BT3542	0.64	+1.8
4,579,891	-		BT3542	0.65	+1.2
4,579,914	-		BT3542	0.67	-0.2
4,579,921	-		BT3542	0.68	-1.2
4,579,927	-		BT3542	0.68	-1.7
4,579,929	-		BT3542	0.68	-1.4
4,579,969	+		BT3542	0.72	-0.1
4,579,972	-		BT3542	0.72	-1.0
4,579,972	-		BT3542	0.72	-0.8
4,580,101	-		BT3542	0.83	-0.9
4,580,105	-		BT3542	0.83	-2.1
4,580,105	-		BT3542	0.83	-0.6
4,580,105	-		BT3542	0.83	-0.6
4,580,133	-		BT3542	0.85	+0.2
4,580,138	-		BT3542	0.86	+1.9
4,580,204	-				-1.5
4,580,204	-				-1.7
4,580,242	-				+1.9
4,580,259	-				+1.5
4,580,281	-				-1.1
4,580,340	-				-1.3
4,580,474	-				-0.1
4,580,488	+				-0.1
4,580,500	+				-1.2
4,580,517	-		BT3543	0.11	-1.0
4,580,543	+		BT3543	0.14	+0.3
4,580,544	-		BT3543	0.15	-1.1
4,580,544	-		BT3543	0.15	+0.9
4,580,578	+		BT3543	0.19	-1.1
4,580,616	-		BT3543	0.24	+0.5
4,580,687	+		BT3543	0.34	-1.1
4,580,730	-		BT3543	0.40	-1.1
4,580,730	-		BT3543	0.40	+0.9
4,580,739	-		BT3543	0.41	-0.4
4,580,748	+		BT3543	0.43	-0.1
4,580,749	-		BT3543	0.43	+0.2
4,580,749	-		BT3543	0.43	-0.1
4,580,751	-		BT3543	0.43	-2.1
4,580,795	-		BT3543	0.49	-1.4
4,580,841	-		BT3543	0.56	-2.1
4,580,841	-		BT3543	0.56	-0.1
4,580,892	-		BT3543	0.63	-1.8
4,580,903	+		BT3543	0.64	-0.1
4,580,903	+		BT3543	0.64	-2.1
4,580,955	-		BT3543	0.71	-0.1
4,580,958	-		BT3543	0.72	-1.1
4,580,976	-		BT3543	0.74	-1.1
4,580,980	-		BT3543	0.75	-1.6
4,580,991	+		BT3543	0.76	+1.9
4,581,017	-		BT3543	0.80	-3.1
4,581,023	+		BT3543	0.81	+1.2
4,581,062	-		BT3543	0.86	-0.5
4,581,099	+				+0.4
4,581,100	-				-0.1
4,581,100	-				-0.5
4,581,122	+				-2.4
4,581,150	-				-1.1
4,581,169	-				-0.7
4,581,172	-				+0.2
4,581,176	+				-0.5
4,581,185	-				-0.5
4,581,191	-		BT3544	0.11	-0.7
4,581,270	+		BT3544	0.41	-1.5
4,581,300	+		BT3544	0.53	+0.9
4,581,301	-		BT3544	0.53	+1.5
4,581,303	-		BT3544	0.54	-0.7