Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3412

Experiment: Rhamnogalacturonan - from potato; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan - from potato; autoclaved 2.5 mg/ml (C)
4,394,931	+		BT3411	0.79	-1.1
4,394,997	-		BT3411	0.82	+0.9
4,395,065	-		BT3411	0.85	-2.1
4,395,112	-		BT3411	0.88	-1.9
4,395,157	+		BT3411	0.90	-0.1
4,395,203	+				+1.5
4,395,207	+				+0.3
4,395,247	+				-2.7
4,395,258	+				-1.1
4,395,262	-				-2.3
4,395,292	+				-0.1
4,395,293	-				+0.7
4,395,293	-				-1.4
4,395,328	+				-0.1
4,395,328	+				-1.7
4,395,329	-				-1.3
4,395,329	-				-3.4
4,395,339	+				-1.8
4,395,340	-				-1.3
4,395,361	+				-1.7
4,395,361	+				-1.7
4,395,403	+				-0.9
4,395,456	+				-2.4
4,395,457	-				-0.1
4,395,457	-				-1.3
4,395,457	-				+0.5
4,395,457	-				-1.5
4,395,538	-				-2.4
4,395,566	+				-0.6
4,395,573	+				-1.1
4,395,594	-				-0.1
4,395,595	+				-1.1
4,395,598	+				-1.5
4,395,599	-				+0.1
4,395,600	+				-0.9
4,395,600	+				-0.1
4,395,635	-				-1.7
4,395,635	-				-0.4
4,395,661	-				-1.7
4,395,733	+				-0.2
4,395,734	-				-1.5
4,395,736	-				-1.7
4,395,846	+				-1.7
4,395,850	+				+0.2
4,395,850	+				-0.1
4,395,850	+				-0.8
4,395,851	-				-1.1
4,395,851	-				+0.3
4,395,851	-				-1.3
4,395,851	-				-1.8
4,395,859	-				+0.9
4,395,863	+				-2.7
4,395,868	-				-0.5
4,396,189	+		BT3412	0.56	-1.1
4,396,210	+		BT3412	0.60	+0.6
4,396,213	+		BT3412	0.60	-0.9
4,396,213	+		BT3412	0.60	-0.2
4,396,261	+		BT3412	0.68	-0.1
4,396,261	+		BT3412	0.68	-0.1
4,396,262	-		BT3412	0.68	-0.1
4,396,278	-		BT3412	0.71	-0.7
4,396,278	-		BT3412	0.71	+0.7
4,396,292	-		BT3412	0.73	+0.9
4,396,334	-		BT3412	0.80	-1.1
4,396,454	+				+0.9
4,396,582	+				+0.9
4,396,583	-				-0.7
4,396,583	-				-0.8
4,396,584	+				-1.9
4,396,645	-				-0.6
4,396,672	+				-0.5
4,396,733	+				-0.4
4,396,742	+				-0.1
4,396,743	-				-0.9
4,396,755	-				-1.5
4,396,755	-				+0.5
4,396,800	-		BT3413	0.12	-1.5
4,396,859	+		BT3413	0.16	-1.1
4,396,860	-		BT3413	0.16	-0.4
4,396,862	+		BT3413	0.16	-0.6
4,396,864	+		BT3413	0.16	-0.1
4,396,865	-		BT3413	0.16	-0.5
4,396,865	-		BT3413	0.16	+1.5
4,396,868	+		BT3413	0.17	-1.7
4,396,868	+		BT3413	0.17	-1.4
4,396,869	-		BT3413	0.17	+0.4
4,396,895	+		BT3413	0.18	-1.6
4,396,895	+		BT3413	0.18	-0.2
4,396,895	+		BT3413	0.18	-1.2
4,396,898	+		BT3413	0.19	+0.0
4,396,962	-		BT3413	0.23	-1.1
4,397,011	+		BT3413	0.26	-1.1
4,397,029	+		BT3413	0.28	-2.1
4,397,030	-		BT3413	0.28	+0.5
4,397,041	+		BT3413	0.28	-0.9
4,397,041	+		BT3413	0.28	+0.5
4,397,045	+		BT3413	0.29	-0.1
4,397,046	-		BT3413	0.29	-0.4
4,397,046	-		BT3413	0.29	-0.1
4,397,137	+		BT3413	0.35	-1.7
4,397,145	+		BT3413	0.36	-1.6
4,397,145	+		BT3413	0.36	-0.1
4,397,197	+				-0.7
4,397,218	+		BT3413	0.41	-0.5
4,397,232	-		BT3413	0.42	-1.7
4,397,248	+		BT3413	0.43	-0.1
4,397,263	+		BT3413	0.44	-0.9
4,397,263	+		BT3413	0.44	-0.1
4,397,264	-		BT3413	0.44	-2.1
4,397,264	-		BT3413	0.44	-2.7
4,397,264	-		BT3413	0.44	+0.1
4,397,322	+		BT3413	0.48	-1.0
4,397,330	+		BT3413	0.48	-0.7
4,397,391	-		BT3413	0.52	+1.4
4,397,418	+		BT3413	0.54	-1.4
4,397,419	-		BT3413	0.54	-0.6
4,397,438	+		BT3413	0.56	-0.3