Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1653

Experiment: Rhamnogalacturonan - from potato; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan - from potato; autoclaved 2.5 mg/ml (C)
2,042,637	+		BT1652	0.43	-0.0
2,042,661	-		BT1652	0.44	-1.6
2,042,666	+		BT1652	0.45	-1.0
2,042,666	+		BT1652	0.45	-1.1
2,042,667	-		BT1652	0.45	+1.0
2,042,668	+		BT1652	0.45	-1.0
2,042,720	+		BT1652	0.49	-1.7
2,042,783	+		BT1652	0.53	-1.4
2,042,793	-		BT1652	0.54	-1.9
2,042,820	-		BT1652	0.56	-0.8
2,042,868	+		BT1652	0.59	-0.0
2,042,994	+		BT1652	0.68	+1.2
2,042,995	-		BT1652	0.68	+1.0
2,043,105	+		BT1652	0.75	-2.0
2,043,182	-		BT1652	0.81	-0.6
2,043,201	+		BT1652	0.82	-0.6
2,043,202	-		BT1652	0.82	-1.0
2,043,221	+		BT1652	0.83	-1.7
2,043,221	+		BT1652	0.83	-1.3
2,043,239	+		BT1652	0.85	-1.6
2,043,309	+		BT1652	0.89	-2.0
2,043,309	+		BT1652	0.89	+1.0
2,043,321	-				-1.2
2,043,324	+				-1.0
2,043,346	-				-2.6
2,043,375	+				-1.8
2,043,375	+				-2.8
2,043,386	+				-0.0
2,043,447	-				-2.6
2,043,476	-				-0.4
2,043,559	+				-0.8
2,043,559	+				-1.0
2,043,560	-				-1.0
2,043,561	+				-0.3
2,043,679	+		BT1653	0.16	+0.5
2,043,721	-		BT1653	0.20	-2.8
2,043,722	+		BT1653	0.20	-1.0
2,043,723	-		BT1653	0.20	+0.6
2,043,725	-		BT1653	0.20	+1.0
2,043,725	-		BT1653	0.20	-1.9
2,043,776	-				-0.6
2,043,805	-		BT1653	0.28	-0.0
2,043,805	-		BT1653	0.28	+0.6
2,043,840	-		BT1653	0.31	+0.6
2,043,915	+		BT1653	0.38	-0.0
2,043,916	+		BT1653	0.38	-1.6
2,043,917	-		BT1653	0.38	-0.0
2,043,917	-		BT1653	0.38	-0.0
2,043,921	+		BT1653	0.38	-0.7
2,043,921	+				-0.0
2,043,921	+		BT1653	0.38	-0.0
2,044,034	-		BT1653	0.48	-1.3
2,044,175	-		BT1653	0.61	+0.6
2,044,180	-		BT1653	0.62	+1.0
2,044,181	+		BT1653	0.62	-1.0
2,044,223	-		BT1653	0.66	+2.3
2,044,321	+		BT1653	0.75	-1.4
2,044,321	+		BT1653	0.75	-0.0
2,044,347	+		BT1653	0.77	-0.0
2,044,375	+		BT1653	0.80	-0.0
2,044,430	+		BT1653	0.85	-0.7
2,044,441	-		BT1653	0.86	+1.0
2,044,443	-		BT1653	0.86	-0.3
2,044,473	+		BT1653	0.88	-1.6
2,044,540	+				+1.0
2,044,540	+				-1.0
2,044,629	-				+1.6
2,044,655	+				-1.6
2,044,688	+				-1.0
2,044,691	+				-2.3
2,044,721	+				+0.4
2,044,788	-				+1.0
2,044,788	-				-2.3
2,044,790	-				+1.0
2,044,791	+				+2.0
2,044,792	-				-0.0
2,044,792	-				-1.0
2,044,849	+		BT1654	0.10	+1.0
2,044,857	+		BT1654	0.11	-2.0
2,044,877	-		BT1654	0.11	-0.3
2,044,928	+		BT1654	0.14	-1.6
2,044,985	+		BT1654	0.16	-0.7
2,045,516	+				+1.0