Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1932

Experiment: Rhamnogalacturonan - from potato; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan - from potato; autoclaved 2.5 mg/ml (C)
2,426,213	-		BT1931	0.72	-1.0
2,426,213	-		BT1931	0.72	+0.0
2,426,226	+		BT1931	0.72	-2.3
2,426,226	+		BT1931	0.72	-0.6
2,426,227	-		BT1931	0.73	-1.8
2,426,231	-		BT1931	0.73	-0.5
2,426,235	+		BT1931	0.73	-2.1
2,426,235	+		BT1931	0.73	-0.7
2,426,236	-		BT1931	0.73	+0.4
2,426,236	-		BT1931	0.73	-1.1
2,426,269	-		BT1931	0.74	-1.5
2,426,291	+		BT1931	0.74	-1.3
2,426,314	-		BT1931	0.75	-2.0
2,426,315	+		BT1931	0.75	-0.6
2,426,315	+		BT1931	0.75	-0.5
2,426,316	-		BT1931	0.75	-1.5
2,426,441	-		BT1931	0.79	+0.0
2,426,450	+		BT1931	0.79	+0.0
2,426,580	-		BT1931	0.82	-1.7
2,426,593	+		BT1931	0.83	-0.5
2,426,593	+		BT1931	0.83	-1.5
2,426,644	+				-1.0
2,426,684	-		BT1931	0.85	-0.5
2,426,708	+		BT1931	0.86	+0.3
2,426,737	+		BT1931	0.87	-0.7
2,426,737	+		BT1931	0.87	-1.8
2,426,829	+		BT1931	0.90	+0.0
2,426,852	+				+1.0
2,426,852	+				+0.0
2,426,884	+				-0.8
2,426,884	+				+0.0
2,427,026	+				-1.3
2,427,028	-				-0.4
2,427,102	+				+0.0
2,427,117	+				-0.5
2,427,121	+				+0.0
2,427,138	+				-1.5
2,427,139	-				-1.0
2,427,140	+				-0.7
2,427,192	-				+0.0
2,427,217	+				+0.0
2,427,254	-		BT1932	0.13	-1.4
2,427,256	-		BT1932	0.13	-0.6
2,427,265	-		BT1932	0.14	-1.1
2,427,275	+		BT1932	0.16	+0.0
2,427,286	-		BT1932	0.17	-2.3
2,427,286	-		BT1932	0.17	+0.0
2,427,305	+		BT1932	0.20	-1.5
2,427,305	+		BT1932	0.20	-0.7
2,427,350	+		BT1932	0.26	-0.2
2,427,350	+		BT1932	0.26	-1.5
2,427,355	+		BT1932	0.27	-1.5
2,427,355	+		BT1932	0.27	+0.5
2,427,356	-		BT1932	0.27	+0.1
2,427,425	-		BT1932	0.37	-0.1
2,427,770	+		BT1932	0.86	-0.1
2,427,824	-				+0.0
2,427,968	+				+0.0
2,427,978	-				-2.1
2,427,987	+				-1.5
2,427,988	-				-1.0
2,428,043	+				+0.0
2,428,044	-				-0.4
2,428,044	-				-1.1
2,428,071	+				+0.0
2,428,072	-				+0.0
2,428,073	+				-1.1
2,428,074	-				-1.3
2,428,082	+				-0.2
2,428,142	-		BT1933	0.29	-1.5
2,428,142	-		BT1933	0.29	+1.0
2,428,171	+		BT1933	0.40	-0.6
2,428,172	-		BT1933	0.40	-0.3
2,428,172	-		BT1933	0.40	-0.4
2,428,283	-				+0.0
2,428,283	-				-2.0
2,428,287	-				-3.2
2,428,308	-				-2.3
2,428,375	-				-0.5
2,428,395	+				+3.8
2,428,484	+				+0.5
2,428,497	-		BT1934	0.10	-0.3
2,428,515	-		BT1934	0.11	-2.0
2,428,519	-		BT1934	0.11	+0.0
2,428,607	-		BT1934	0.15	-1.3
2,428,706	+		BT1934	0.20	-0.3
2,428,706	+		BT1934	0.20	-0.5
2,428,749	+		BT1934	0.22	-2.3
2,428,808	-		BT1934	0.25	+0.4
2,428,838	-		BT1934	0.26	-0.2