Experiment: Rhamnogalacturonan - from potato; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0779 and BT0780 are separated by 125 nucleotides BT0780 and BT0781 are separated by 4 nucleotides BT0781 and BT0782 are separated by 127 nucleotides BT0782 and BT0783 overlap by 52 nucleotides BT0783 and BT0784 are separated by 278 nucleotides
BT0779: BT0779 - hypothetical protein (NCBI ptt file), at 970,763 to 971,086
BT0779
BT0780: BT0780 - acetyltransferase (NCBI ptt file), at 971,212 to 971,718
BT0780
BT0781: BT0781 - hypothetical protein (NCBI ptt file), at 971,723 to 972,445
BT0781
BT0782: BT0782 - hypothetical protein (NCBI ptt file), at 972,573 to 972,776
BT0782
BT0783: BT0783 - hypothetical protein (NCBI ptt file), at 972,725 to 972,913
BT0783
BT0784: BT0784 - putative RNA-binding protein (NCBI ptt file), at 973,192 to 973,437
BT0784
Position (kb) 971
972
973 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 970.803 kb on + strand, within BT0779 at 970.833 kb on + strand, within BT0779 at 970.885 kb on + strand, within BT0779 at 970.970 kb on + strand, within BT0779 at 971.011 kb on + strand, within BT0779 at 971.043 kb on + strand, within BT0779 at 971.044 kb on - strand, within BT0779 at 971.079 kb on + strand at 971.098 kb on + strand at 971.101 kb on + strand at 971.154 kb on - strand at 971.156 kb on + strand at 971.167 kb on + strand at 971.187 kb on - strand at 971.189 kb on - strand at 971.348 kb on + strand, within BT0780 at 971.351 kb on - strand, within BT0780 at 971.368 kb on + strand, within BT0780 at 971.368 kb on + strand, within BT0780 at 971.369 kb on - strand, within BT0780 at 971.380 kb on - strand, within BT0780 at 971.610 kb on - strand, within BT0780 at 971.672 kb on - strand at 971.718 kb on + strand at 971.809 kb on - strand, within BT0781 at 971.809 kb on - strand, within BT0781 at 971.819 kb on - strand, within BT0781 at 971.840 kb on - strand, within BT0781 at 971.851 kb on + strand, within BT0781 at 971.852 kb on - strand, within BT0781 at 971.865 kb on + strand, within BT0781 at 971.874 kb on - strand, within BT0781 at 971.874 kb on - strand, within BT0781 at 971.984 kb on - strand, within BT0781 at 971.996 kb on - strand, within BT0781 at 972.032 kb on + strand, within BT0781 at 972.033 kb on - strand, within BT0781 at 972.088 kb on + strand, within BT0781 at 972.112 kb on - strand, within BT0781 at 972.159 kb on - strand, within BT0781 at 972.178 kb on + strand, within BT0781 at 972.191 kb on + strand, within BT0781 at 972.247 kb on + strand, within BT0781 at 972.248 kb on - strand, within BT0781 at 972.293 kb on - strand, within BT0781 at 972.319 kb on + strand, within BT0781 at 972.378 kb on - strand at 972.458 kb on + strand at 972.459 kb on - strand at 972.667 kb on - strand, within BT0782 at 972.704 kb on + strand, within BT0782 at 972.742 kb on + strand at 972.743 kb on - strand at 972.743 kb on - strand at 972.767 kb on + strand at 972.786 kb on - strand, within BT0783 at 972.856 kb on + strand, within BT0783 at 972.857 kb on - strand, within BT0783 at 972.914 kb on + strand at 972.956 kb on + strand at 973.135 kb on + strand at 973.219 kb on + strand, within BT0784 at 973.221 kb on + strand, within BT0784
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan - from potato; autoclaved 2.5 mg/ml (C) remove 970,803 + BT0779 0.12 -0.0 970,833 + BT0779 0.22 +0.7 970,885 + BT0779 0.38 -0.8 970,970 + BT0779 0.64 -1.6 971,011 + BT0779 0.77 -1.0 971,043 + BT0779 0.86 -1.6 971,044 - BT0779 0.87 -0.9 971,079 + -1.9 971,098 + -1.0 971,101 + -0.0 971,154 - -0.0 971,156 + +0.7 971,167 + -0.3 971,187 - +1.6 971,189 - -1.0 971,348 + BT0780 0.27 +0.6 971,351 - BT0780 0.27 -0.8 971,368 + BT0780 0.31 -0.6 971,368 + BT0780 0.31 -0.4 971,369 - BT0780 0.31 -1.0 971,380 - BT0780 0.33 -0.9 971,610 - BT0780 0.79 -0.6 971,672 - -0.0 971,718 + +1.0 971,809 - BT0781 0.12 -0.0 971,809 - BT0781 0.12 -0.6 971,819 - BT0781 0.13 -0.0 971,840 - BT0781 0.16 +0.3 971,851 + BT0781 0.18 -0.0 971,852 - BT0781 0.18 +2.0 971,865 + BT0781 0.20 -0.6 971,874 - BT0781 0.21 -3.0 971,874 - BT0781 0.21 -1.6 971,984 - BT0781 0.36 +2.3 971,996 - BT0781 0.38 +1.0 972,032 + BT0781 0.43 +0.6 972,033 - BT0781 0.43 +1.0 972,088 + BT0781 0.50 -1.6 972,112 - BT0781 0.54 -0.2 972,159 - BT0781 0.60 +0.3 972,178 + BT0781 0.63 -1.0 972,191 + BT0781 0.65 -0.0 972,247 + BT0781 0.72 +2.8 972,248 - BT0781 0.73 +1.0 972,293 - BT0781 0.79 +0.1 972,319 + BT0781 0.82 -0.4 972,378 - -0.9 972,458 + -0.6 972,459 - +1.6 972,667 - BT0782 0.46 -1.8 972,704 + BT0782 0.64 +0.3 972,742 + -1.5 972,743 - -0.6 972,743 - -0.4 972,767 + -1.3 972,786 - BT0783 0.32 -1.0 972,856 + BT0783 0.69 +0.6 972,857 - BT0783 0.70 -1.0 972,914 + -1.6 972,956 + -0.0 973,135 + +0.3 973,219 + BT0784 0.11 -0.0 973,221 + BT0784 0.12 -1.6
Or see this region's nucleotide sequence