Experiment: Rhamnogalacturonan - from potato; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0305 and BT0306 overlap by 1 nucleotides BT0306 and BT0307 are separated by 128 nucleotides
BT0305: BT0305 - putative aminoglycoside efflux pump (Acriflavine resistance protein) (NCBI ptt file), at 364,111 to 367,215
BT0305
BT0306: BT0306 - outer membrane protein oprM precursor (NCBI ptt file), at 367,215 to 368,588
BT0306
BT0307: BT0307 - phosphofructokinase (NCBI ptt file), at 368,717 to 370,363
BT0307
Position (kb) 367
368
369 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 366.219 kb on + strand, within BT0305 at 366.394 kb on + strand, within BT0305 at 366.395 kb on - strand, within BT0305 at 366.401 kb on + strand, within BT0305 at 366.406 kb on - strand, within BT0305 at 366.481 kb on - strand, within BT0305 at 366.481 kb on - strand, within BT0305 at 366.481 kb on - strand, within BT0305 at 366.481 kb on - strand, within BT0305 at 366.487 kb on - strand, within BT0305 at 366.556 kb on - strand, within BT0305 at 366.795 kb on - strand, within BT0305 at 366.795 kb on - strand, within BT0305 at 366.887 kb on + strand, within BT0305 at 367.180 kb on - strand at 367.231 kb on + strand at 367.232 kb on - strand at 367.235 kb on + strand at 367.236 kb on - strand at 367.241 kb on + strand at 367.291 kb on - strand at 367.313 kb on - strand at 367.405 kb on + strand, within BT0306 at 367.433 kb on + strand, within BT0306 at 367.729 kb on - strand, within BT0306 at 367.729 kb on - strand, within BT0306 at 367.732 kb on - strand, within BT0306 at 367.780 kb on + strand, within BT0306 at 367.852 kb on - strand, within BT0306 at 367.868 kb on - strand, within BT0306 at 368.060 kb on - strand, within BT0306 at 368.228 kb on + strand, within BT0306 at 368.229 kb on - strand, within BT0306 at 368.231 kb on - strand, within BT0306 at 368.281 kb on - strand, within BT0306 at 368.293 kb on + strand, within BT0306 at 368.439 kb on + strand, within BT0306 at 368.440 kb on - strand, within BT0306 at 368.460 kb on + strand at 368.556 kb on + strand at 368.586 kb on + strand at 368.599 kb on + strand at 368.600 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan - from potato; autoclaved 2.5 mg/ml (C) remove 366,219 + BT0305 0.68 +1.0 366,394 + BT0305 0.74 -1.0 366,395 - BT0305 0.74 -1.0 366,401 + BT0305 0.74 -1.0 366,406 - BT0305 0.74 -0.0 366,481 - BT0305 0.76 -2.0 366,481 - BT0305 0.76 -1.3 366,481 - BT0305 0.76 -2.6 366,481 - BT0305 0.76 -1.6 366,487 - BT0305 0.77 -0.6 366,556 - BT0305 0.79 -0.4 366,795 - BT0305 0.86 +2.3 366,795 - BT0305 0.86 -0.0 366,887 + BT0305 0.89 -0.0 367,180 - -2.5 367,231 + -0.0 367,232 - -1.0 367,235 + +0.7 367,236 - +0.7 367,241 + -1.6 367,291 - +1.0 367,313 - -1.3 367,405 + BT0306 0.14 -2.0 367,433 + BT0306 0.16 -0.0 367,729 - BT0306 0.37 -0.5 367,729 - BT0306 0.37 -1.5 367,732 - BT0306 0.38 +2.3 367,780 + BT0306 0.41 -0.4 367,852 - BT0306 0.46 -2.0 367,868 - BT0306 0.48 -0.6 368,060 - BT0306 0.61 -1.3 368,228 + BT0306 0.74 -0.5 368,229 - BT0306 0.74 -0.0 368,231 - BT0306 0.74 -1.6 368,281 - BT0306 0.78 -2.8 368,293 + BT0306 0.78 -0.0 368,439 + BT0306 0.89 -2.0 368,440 - BT0306 0.89 -0.5 368,460 + -0.8 368,556 + +1.5 368,586 + -0.0 368,599 + -2.0 368,600 - -0.3
Or see this region's nucleotide sequence