Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3512

Experiment: Mannan from Saccharomyces cerevisiae; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mannan from Saccharomyces cerevisiae; autoclaved 2.5 mg/ml (C)
4,529,940	-				-2.9
4,529,941	+				-1.3
4,529,965	-				-2.1
4,530,003	-		BT3510	0.18	-2.8
4,530,236	-		BT3510	0.89	-2.4
4,530,287	-				-3.4
4,530,289	+				-3.1
4,530,316	-				-1.1
4,530,332	+				-0.1
4,530,342	-				-1.1
4,530,342	-				-0.1
4,530,402	+		BT3511	0.17	-3.9
4,530,402	+		BT3511	0.17	-2.9
4,530,451	-		BT3511	0.27	-2.4
4,530,451	-		BT3511	0.27	-0.9
4,530,491	-		BT3511	0.35	-1.1
4,530,499	+		BT3511	0.36	-0.6
4,530,500	-		BT3511	0.37	-1.1
4,530,647	+		BT3511	0.66	-1.6
4,530,694	-		BT3511	0.75	-0.1
4,530,708	+		BT3511	0.78	-0.7
4,530,713	-		BT3511	0.79	-0.9
4,530,714	+		BT3511	0.79	-0.4
4,530,787	+				-1.4
4,530,788	-				-4.1
4,530,802	-				-0.9
4,530,802	-				-0.1
4,530,804	-				-0.1
4,530,830	-				-0.1
4,530,830	-				-0.7
4,530,862	+				-0.7
4,530,888	+				-1.1
4,530,888	+				-3.6
4,530,891	-				-3.6
4,530,910	-				-1.1
4,530,957	+				-2.9
4,531,030	+				-2.9
4,531,064	-				-0.6
4,531,065	+				-0.8
4,531,093	+				-0.7
4,531,094	-				+0.5
4,531,094	-				-1.1
4,531,094	-				-1.8
4,531,111	+				+1.2
4,531,112	-				-1.7
4,531,112	-				-2.1
4,531,112	-				-2.2
4,531,112	-				-1.3
4,531,124	+				-1.8
4,531,146	+				-1.1
4,531,176	+		BT3512	0.10	-0.8
4,531,198	-		BT3512	0.11	-0.1
4,531,221	-		BT3512	0.12	-1.3
4,531,221	-		BT3512	0.12	-1.1
4,531,272	+		BT3512	0.14	-0.1
4,531,315	-		BT3512	0.16	-1.8
4,531,315	-		BT3512	0.16	-0.1
4,531,408	+		BT3512	0.20	-3.3
4,531,409	-		BT3512	0.20	-2.7
4,531,409	-		BT3512	0.20	-2.5
4,531,409	-		BT3512	0.20	-1.8
4,531,409	-		BT3512	0.20	-0.1
4,531,498	+		BT3512	0.23	+0.9
4,531,604	-		BT3512	0.27	-0.1
4,531,604	-		BT3512	0.27	-2.6
4,531,655	-		BT3512	0.29	-1.1
4,531,665	+		BT3512	0.30	-1.5
4,531,666	-		BT3512	0.30	-3.4
4,531,788	+		BT3512	0.35	-1.7
4,531,792	+		BT3512	0.35	+1.2
4,531,815	+		BT3512	0.36	-2.1
4,531,821	-		BT3512	0.36	+0.9
4,531,827	-		BT3512	0.36	-0.1
4,531,827	-		BT3512	0.36	-0.1
4,531,827	-		BT3512	0.36	-2.1
4,531,849	+		BT3512	0.37	-0.7
4,531,850	-		BT3512	0.37	-1.4
4,531,913	-		BT3512	0.40	-0.7
4,532,029	-		BT3512	0.44	-2.9
4,532,128	+		BT3512	0.48	-0.7
4,532,293	-		BT3512	0.55	-4.6
4,532,296	-		BT3512	0.55	-0.8
4,532,296	-		BT3512	0.55	-0.7
4,532,296	-		BT3512	0.55	-1.9
4,532,304	-		BT3512	0.55	-1.1
4,532,310	-		BT3512	0.55	-1.1
4,532,344	-		BT3512	0.57	-2.0
4,532,380	+		BT3512	0.58	+0.9
4,532,388	-		BT3512	0.59	-2.4
4,532,505	+		BT3512	0.63	-1.5
4,532,559	+		BT3512	0.65	-0.6
4,532,560	-		BT3512	0.65	-3.6
4,532,560	-		BT3512	0.65	-1.1
4,532,616	-		BT3512	0.68	-3.3
4,532,650	+		BT3512	0.69	-1.1
4,532,653	-		BT3512	0.69	-1.9
4,532,655	+		BT3512	0.69	-2.6
4,532,655	+		BT3512	0.69	-0.8
4,532,751	+		BT3512	0.73	-4.0
4,532,751	+		BT3512	0.73	-1.9
4,532,751	+		BT3512	0.73	-1.2
4,532,752	-		BT3512	0.73	-0.1
4,532,842	+		BT3512	0.77	-2.3
4,532,842	+		BT3512	0.77	-1.5
4,532,922	+		BT3512	0.80	-0.7
4,532,928	-		BT3512	0.80	-2.4
4,532,928	-		BT3512	0.80	-3.4
4,532,935	+		BT3512	0.80	+1.9
4,532,935	+		BT3512	0.80	-1.1
4,532,971	+		BT3512	0.82	+0.0
4,533,167	+		BT3512	0.89	-0.1
4,533,194	+				-2.0
4,533,195	-				-2.7
4,533,292	+				-2.8
4,533,301	-				-1.2
4,533,301	-				-3.1
4,533,419	+				-2.1
4,533,420	-				-0.8
4,533,425	-				-0.1
4,533,435	-				-3.3
4,533,507	-				-0.6
4,533,523	+				-2.4
4,533,571	+				-1.5
4,533,571	+				-1.7
4,533,571	+				-3.8
4,533,627	+		BT3513	0.10	+0.9
4,533,631	+		BT3513	0.10	-2.6
4,533,638	+		BT3513	0.11	-0.7
4,533,717	-		BT3513	0.15	+0.3
4,533,720	+		BT3513	0.15	-0.1
4,533,769	+		BT3513	0.18	-1.1
4,533,770	-		BT3513	0.18	-0.5
4,533,956	-		BT3513	0.28	-0.4
4,533,956	-		BT3513	0.28	-0.7
4,534,037	-		BT3513	0.33	+1.5
4,534,037	-		BT3513	0.33	-2.4
4,534,037	-		BT3513	0.33	-2.1
4,534,039	+		BT3513	0.33	+1.1
4,534,040	-		BT3513	0.33	+0.0
4,534,040	-		BT3513	0.33	-2.1
4,534,120	+		BT3513	0.37	-0.1
4,534,126	+		BT3513	0.38	-3.2
4,534,201	+		BT3513	0.42	-1.1
4,534,204	-		BT3513	0.42	+0.9
4,534,204	-		BT3513	0.42	-2.5
4,534,233	+		BT3513	0.43	-2.1
4,534,234	-		BT3513	0.44	-0.1
4,534,307	+		BT3513	0.48	-2.9
4,534,325	+		BT3513	0.49	-2.1
4,534,354	+		BT3513	0.50	-1.7
4,534,355	-		BT3513	0.50	-1.1
4,534,406	+		BT3513	0.53	-1.4