Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2998

Experiment: Mannan from Saccharomyces cerevisiae; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mannan from Saccharomyces cerevisiae; autoclaved 2.5 mg/ml (C)
3,777,342	+				-1.6
3,777,346	+				-2.1
3,777,354	-				-3.2
3,777,356	+				-1.4
3,777,357	-				-0.6
3,777,385	-				-3.0
3,777,398	+				-0.7
3,777,417	+				-1.6
3,777,437	+				-2.1
3,777,448	-				-0.5
3,777,516	-				-1.1
3,777,516	-				-1.2
3,777,537	-				-2.1
3,777,542	+				-1.9
3,777,542	+				+1.5
3,777,589	+				-0.4
3,777,589	+				-3.2
3,777,624	+				-0.1
3,777,625	-				-0.5
3,777,652	+				+0.5
3,777,653	-				-0.1
3,777,666	-				-1.2
3,777,678	+				-1.8
3,777,679	-				-2.7
3,777,699	-				-1.1
3,777,703	+				-0.6
3,777,736	+				-1.1
3,777,741	+				-1.1
3,777,749	+				+2.3
3,777,753	+				-3.5
3,777,762	+				-0.3
3,777,786	-				-3.6
3,777,786	-				-1.6
3,777,821	+		BT2997	0.16	-0.3
3,777,822	-		BT2997	0.16	-0.6
3,777,852	+		BT2997	0.22	-0.6
3,777,853	-		BT2997	0.22	-1.1
3,777,856	+		BT2997	0.23	-0.5
3,777,857	-		BT2997	0.23	+1.3
3,777,857	-		BT2997	0.23	-2.3
3,777,862	+		BT2997	0.24	+0.2
3,777,863	-		BT2997	0.24	-3.1
3,777,884	+		BT2997	0.29	-3.0
3,777,894	+		BT2997	0.31	+0.5
3,777,894	+		BT2997	0.31	-0.1
3,777,895	-		BT2997	0.31	-0.1
3,777,903	+		BT2997	0.32	-2.1
3,777,903	+		BT2997	0.32	-1.4
3,777,904	-				-3.1
3,777,904	-		BT2997	0.33	-2.8
3,777,919	+		BT2997	0.36	-0.8
3,777,928	+		BT2997	0.37	-0.1
3,777,928	+		BT2997	0.37	-0.2
3,777,928	+		BT2997	0.37	-0.4
3,777,969	-		BT2997	0.46	-0.1
3,777,969	-		BT2997	0.46	+0.6
3,777,969	-		BT2997	0.46	-1.1
3,777,981	-		BT2997	0.48	-0.1
3,777,981	-		BT2997	0.48	-1.6
3,777,987	-		BT2997	0.49	-0.8
3,777,997	+		BT2997	0.51	-1.1
3,777,998	-		BT2997	0.51	-1.1
3,777,998	-		BT2997	0.51	-1.4
3,778,002	+		BT2997	0.52	+0.9
3,778,002	+		BT2997	0.52	-1.6
3,778,002	+		BT2997	0.52	-0.1
3,778,002	+		BT2997	0.52	-2.1
3,778,002	+		BT2997	0.52	-0.6
3,778,003	-		BT2997	0.52	+1.5
3,778,003	-		BT2997	0.52	-2.6
3,778,005	-		BT2997	0.53	-2.3
3,778,005	-		BT2997	0.53	-0.1
3,778,033	-		BT2997	0.58	-2.3
3,778,050	+		BT2997	0.62	-2.4
3,778,050	+		BT2997	0.62	-1.9
3,778,054	+		BT2997	0.63	-0.1
3,778,075	-		BT2997	0.67	-3.0
3,778,086	-		BT2997	0.69	-3.0
3,778,086	-		BT2997	0.69	-3.9
3,778,092	+		BT2997	0.70	-1.7
3,778,098	-		BT2997	0.71	-2.8
3,778,098	-		BT2997	0.71	-1.5
3,778,103	+		BT2997	0.72	-1.2
3,778,110	-		BT2997	0.74	-1.1
3,778,203	+				-1.2
3,778,247	+				-2.2
3,778,248	-				+0.9
3,778,310	+				-2.5
3,778,323	+				+1.0
3,778,324	-				-1.3
3,778,335	+				-1.0
3,778,336	-				-0.0
3,778,350	-		BT2998	0.12	-3.2
3,778,360	-		BT2998	0.13	-1.1
3,778,364	+		BT2998	0.14	-0.0
3,778,383	-		BT2998	0.17	-3.3
3,778,399	+		BT2998	0.19	+1.5
3,778,399	+		BT2998	0.19	-0.4
3,778,500	-		BT2998	0.35	-2.4
3,778,500	-		BT2998	0.35	-0.0
3,778,511	+		BT2998	0.36	-2.6
3,778,511	+		BT2998	0.36	-0.0
3,778,528	-		BT2998	0.39	-0.0
3,778,529	+		BT2998	0.39	-0.8
3,778,530	-		BT2998	0.39	-0.8
3,778,575	+		BT2998	0.46	-3.4
3,778,577	+		BT2998	0.46	-1.2
3,778,641	-		BT2998	0.56	-1.6
3,778,643	+		BT2998	0.56	-0.0
3,778,643	+		BT2998	0.56	-1.5
3,778,682	+		BT2998	0.62	-3.2
3,778,682	+		BT2998	0.62	-0.8
3,778,684	+		BT2998	0.62	-2.0
3,778,691	-		BT2998	0.63	-0.7
3,778,726	-		BT2998	0.69	-2.9
3,778,727	+		BT2998	0.69	-1.0
3,778,727	+		BT2998	0.69	-0.0
3,778,727	+		BT2998	0.69	-0.5
3,778,730	+		BT2998	0.69	-2.5
3,778,746	-		BT2998	0.72	-2.3
3,778,751	-		BT2998	0.73	+0.4
3,778,766	-		BT2998	0.75	-0.0
3,778,766	-		BT2998	0.75	-1.0
3,778,774	-		BT2998	0.76	-0.9
3,778,775	-		BT2998	0.76	-0.0
3,778,780	+		BT2998	0.77	-2.6
3,778,781	-		BT2998	0.77	-1.8
3,778,829	+		BT2998	0.84	-0.0
3,778,829	+		BT2998	0.84	-0.4
3,778,829	+		BT2998	0.84	-2.5
3,778,833	+		BT2998	0.85	-2.0
3,778,833	+		BT2998	0.85	-0.5
3,778,840	-		BT2998	0.86	-2.0
3,778,840	-		BT2998	0.86	-2.8
3,778,842	+		BT2998	0.86	-0.8
3,778,849	+		BT2998	0.87	-3.2
3,778,850	-		BT2998	0.88	-0.0
3,778,856	+		BT2998	0.88	-0.4
3,778,857	-		BT2998	0.89	-2.9
3,778,859	+		BT2998	0.89	-3.0
3,778,860	-		BT2998	0.89	+1.0
3,778,868	+				+1.5
3,778,869	-				-2.0
3,778,890	-				-0.6
3,778,905	+				-2.0
3,778,906	-				+0.0
3,778,906	-				-0.0
3,778,908	-				-1.9
3,778,908	-				-0.7
3,778,908	-				-2.6
3,778,929	+				-2.4
3,778,937	-				-1.2
3,778,966	+				-0.7
3,779,000	-				-1.0
3,779,002	+				-1.1
3,779,070	+				-1.1
3,779,071	-				-1.6
3,779,071	-				-0.5
3,779,089	-				-1.0
3,779,115	-				-0.0
3,779,221	+		BT2999	0.10	-2.5
3,779,222	-		BT2999	0.11	-0.0
3,779,318	+		BT2999	0.14	-1.0
3,779,319	-		BT2999	0.14	+0.4
3,779,345	+		BT2999	0.15	-0.6
3,779,346	-				-1.0
3,779,368	+		BT2999	0.16	-0.0
3,779,464	+		BT2999	0.20	-1.0
3,779,475	-		BT2999	0.20	-1.1
3,779,502	-		BT2999	0.21	+0.5
3,779,502	-		BT2999	0.21	-2.4
3,779,521	-		BT2999	0.22	-0.6
3,779,521	-		BT2999	0.22	-3.0
3,779,631	+		BT2999	0.26	+1.0
3,779,633	+		BT2999	0.26	-2.8
3,779,633	+		BT2999	0.26	-1.6
3,779,634	-		BT2999	0.26	-1.9
3,779,634	-		BT2999	0.26	-2.9
3,779,657	+		BT2999	0.27	-0.5
3,779,657	+		BT2999	0.27	-1.5
3,779,657	+		BT2999	0.27	-2.3
3,779,690	+		BT2999	0.28	-3.3
3,779,691	-		BT2999	0.28	-0.2
3,779,691	-		BT2999	0.28	-1.0
3,779,693	-		BT2999	0.29	-0.2
3,779,713	+		BT2999	0.29	-0.0
3,779,714	-		BT2999	0.29	-2.0
3,779,720	-		BT2999	0.30	-2.1
3,779,737	+		BT2999	0.30	-1.0
3,779,771	-		BT2999	0.32	-2.9
3,779,776	-		BT2999	0.32	-0.9
3,779,861	-		BT2999	0.35	+1.0
3,779,902	+		BT2999	0.37	-1.4
3,779,904	+		BT2999	0.37	-1.9
3,779,904	+		BT2999	0.37	-1.6
3,779,904	+		BT2999	0.37	-0.0
3,779,904	+		BT2999	0.37	-2.4