Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2105

Experiment: Mannan from Saccharomyces cerevisiae; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mannan from Saccharomyces cerevisiae; autoclaved 2.5 mg/ml (C)
2,639,838	-		BT2104	0.67	-1.8
2,639,854	-		BT2104	0.68	-2.0
2,639,857	+		BT2104	0.68	-0.0
2,639,858	-		BT2104	0.68	-1.0
2,639,875	-		BT2104	0.68	-1.0
2,639,875	-		BT2104	0.68	-3.7
2,639,875	-		BT2104	0.68	-1.6
2,639,953	-		BT2104	0.71	-3.5
2,639,990	+		BT2104	0.73	-0.0
2,639,990	+		BT2104	0.73	-3.0
2,639,990	+		BT2104	0.73	-1.8
2,639,990	+		BT2104	0.73	-2.2
2,639,991	-		BT2104	0.73	-3.4
2,640,003	+		BT2104	0.73	+0.6
2,640,003	+		BT2104	0.73	-0.0
2,640,031	+		BT2104	0.74	+0.6
2,640,032	-		BT2104	0.74	-0.4
2,640,032	-		BT2104	0.74	-2.7
2,640,049	-		BT2104	0.75	-0.0
2,640,067	+		BT2104	0.76	-1.0
2,640,109	+		BT2104	0.77	-0.0
2,640,180	+		BT2104	0.80	-1.0
2,640,218	+		BT2104	0.81	-2.7
2,640,219	-		BT2104	0.81	-2.0
2,640,412	+		BT2104	0.88	-1.6
2,640,413	-		BT2104	0.88	-4.6
2,640,414	+		BT2104	0.88	-2.7
2,640,441	+		BT2104	0.89	-1.9
2,640,453	-		BT2104	0.90	-1.4
2,640,482	+				-1.0
2,640,483	-				-0.6
2,640,490	+				-1.0
2,640,539	+				-2.0
2,640,540	-				+1.0
2,640,543	+				-2.4
2,640,543	+				+1.0
2,640,544	-				-1.6
2,640,544	-				-0.0
2,640,544	-				-0.0
2,640,544	-				-0.5
2,640,544	-				-1.7
2,640,549	-				+1.0
2,640,551	+				-1.0
2,640,608	-				-0.6
2,640,646	+				-2.0
2,640,649	-				-3.9
2,640,649	-				+2.0
2,640,656	+				-2.6
2,640,657	-				-2.4
2,640,754	+				+0.6
2,640,755	-				-1.0
2,640,758	-				-2.3
2,640,758	-				-0.0
2,640,769	+				-4.6
2,640,775	-				-0.0
2,640,794	+				-0.9
2,640,795	-				-2.0
2,640,795	-				+1.3
2,640,799	+				-0.4
2,640,810	+				-1.4
2,640,811	-				+0.6
2,640,811	-				-1.8
2,640,876	+				-1.9
2,640,978	+				-1.3
2,640,989	-				+1.0
2,641,036	-				-2.2
2,641,046	-				+0.3
2,641,113	+		BT2105	0.11	-2.3
2,641,197	+		BT2105	0.14	-0.8
2,641,210	-		BT2105	0.14	+0.3
2,641,224	+		BT2105	0.15	-1.7
2,641,225	-		BT2105	0.15	+0.1
2,641,235	+		BT2105	0.15	-0.2
2,641,236	-		BT2105	0.15	-0.0
2,641,258	-		BT2105	0.16	-0.0
2,641,325	-		BT2105	0.18	-1.6
2,641,336	+		BT2105	0.18	-2.3
2,641,337	-		BT2105	0.18	-0.4
2,641,446	+		BT2105	0.22	-0.6
2,641,480	-		BT2105	0.23	-0.3
2,641,572	+		BT2105	0.26	+0.7
2,641,701	+		BT2105	0.30	-1.8
2,641,751	+		BT2105	0.32	-0.0
2,641,751	+		BT2105	0.32	-0.8
2,641,752	-		BT2105	0.32	-0.0
2,641,768	-		BT2105	0.32	+0.3
2,641,813	-		BT2105	0.34	+1.4
2,641,843	-		BT2105	0.35	-2.8
2,641,925	+		BT2105	0.37	-1.0
2,641,951	+		BT2105	0.38	+0.8
2,641,997	+				-0.0
2,642,029	-		BT2105	0.40	-0.6
2,642,032	-		BT2105	0.41	-0.0
2,642,057	+		BT2105	0.41	-2.0
2,642,079	+		BT2105	0.42	-1.0
2,642,079	+		BT2105	0.42	-1.6
2,642,080	-		BT2105	0.42	-1.3
2,642,080	-		BT2105	0.42	-0.4
2,642,080	-		BT2105	0.42	-1.4
2,642,081	+		BT2105	0.42	-2.0
2,642,110	-		BT2105	0.43	+0.4
2,642,172	+		BT2105	0.45	+0.4
2,642,195	-		BT2105	0.46	-1.0
2,642,235	+		BT2105	0.47	-2.9
2,642,237	+		BT2105	0.47	-0.6
2,642,238	-		BT2105	0.47	-2.6
2,642,286	+		BT2105	0.49	-2.6
2,642,290	+		BT2105	0.49	-0.0
2,642,351	-		BT2105	0.51	+1.6
2,642,368	+		BT2105	0.51	-0.6
2,642,374	-		BT2105	0.51	-2.0
2,642,383	+		BT2105	0.52	-0.0
2,642,384	-		BT2105	0.52	-1.6
2,642,384	-		BT2105	0.52	-1.0
2,642,394	+		BT2105	0.52	-0.6
2,642,395	-		BT2105	0.52	-0.8
2,642,415	+		BT2105	0.53	-0.8
2,642,462	-		BT2105	0.54	-1.0
2,642,532	-		BT2105	0.56	-0.0
2,642,538	+		BT2105	0.57	+2.0
2,642,601	+		BT2105	0.59	+0.4
2,642,616	+		BT2105	0.59	-1.3
2,642,620	+		BT2105	0.59	-0.0
2,642,621	-		BT2105	0.59	-1.9
2,642,621	-		BT2105	0.59	-0.6
2,642,703	+		BT2105	0.62	-1.0
2,642,704	-		BT2105	0.62	-2.0
2,642,714	+		BT2105	0.62	-1.4
2,642,714	+		BT2105	0.62	-0.0
2,642,716	+		BT2105	0.62	-1.5
2,642,735	+		BT2105	0.63	+1.6
2,642,735	+				-1.6
2,642,736	-		BT2105	0.63	-1.0
2,642,771	+		BT2105	0.64	-1.0
2,642,995	-		BT2105	0.71	-1.5
2,643,005	+		BT2105	0.71	-0.1
2,643,006	-		BT2105	0.72	-0.3
2,643,006	-		BT2105	0.72	-1.0
2,643,006	-		BT2105	0.72	-0.0
2,643,009	+		BT2105	0.72	-0.0
2,643,059	+		BT2105	0.73	-1.4
2,643,145	+		BT2105	0.76	-1.6
2,643,152	-		BT2105	0.76	-0.8
2,643,181	-		BT2105	0.77	+1.0
2,643,200	+		BT2105	0.78	-2.6
2,643,205	-		BT2105	0.78	-1.6
2,643,251	+		BT2105	0.79	-0.0
2,643,316	-		BT2105	0.81	+0.2
2,643,409	-		BT2105	0.84	-0.7
2,643,409	-		BT2105	0.84	-1.6
2,643,415	+		BT2105	0.85	-1.1
2,643,415	+		BT2105	0.85	+1.0
2,643,418	+		BT2105	0.85	-0.0
2,643,419	-		BT2105	0.85	-1.6
2,643,429	-		BT2105	0.85	-0.3
2,643,457	+		BT2105	0.86	-0.0
2,643,470	+		BT2105	0.86	-3.0
2,643,471	-		BT2105	0.86	-0.0
2,643,483	-		BT2105	0.87	-0.0
2,643,484	+		BT2105	0.87	-0.0
2,643,524	-		BT2105	0.88	-1.0
2,643,660	+				-2.4
2,643,717	-				-1.0
2,643,717	-				-2.3
2,643,787	-				-2.8
2,643,823	-				-2.1
2,643,823	-				-0.0
2,643,903	+				-3.0
2,643,904	-				-0.3
2,643,927	-				-1.0
2,643,934	+				-1.3
2,643,979	+				+2.6
2,643,985	+				-0.4
2,643,986	-				-3.0
2,643,996	+				-1.6
2,643,996	+				+0.3
2,644,058	+		BT2106	0.13	-2.3
2,644,061	-		BT2106	0.13	-1.0
2,644,092	-		BT2106	0.16	-0.8
2,644,146	-		BT2106	0.20	-1.0
2,644,152	-		BT2106	0.21	-0.0
2,644,171	+		BT2106	0.22	-1.8
2,644,223	-		BT2106	0.27	-0.0
2,644,251	-		BT2106	0.29	+0.3
2,644,272	-		BT2106	0.31	-1.0
2,644,339	+		BT2106	0.37	+1.0
2,644,339	+		BT2106	0.37	-0.5
2,644,348	+		BT2106	0.38	-0.7
2,644,453	+		BT2106	0.47	-1.6
2,644,453	+		BT2106	0.47	-0.3
2,644,500	-		BT2106	0.51	-2.3
2,644,518	-		BT2106	0.52	-1.0
2,644,554	-		BT2106	0.55	-1.0
2,644,638	+		BT2106	0.63	-1.9
2,644,682	-		BT2106	0.66	-1.0
2,644,691	-		BT2106	0.67	-1.0
2,644,699	+		BT2106	0.68	+0.6
2,644,736	+		BT2106	0.71	+0.7
2,644,736	+		BT2106	0.71	+0.7
2,644,747	+		BT2106	0.72	-3.8
2,644,753	+		BT2106	0.72	-2.0
2,644,793	+		BT2106	0.76	-1.0
2,644,804	+		BT2106	0.77	-1.8
2,644,808	-		BT2106	0.77	-0.0
2,644,816	+		BT2106	0.78	-2.8
2,644,868	+		BT2106	0.82	-4.2
2,644,874	-		BT2106	0.83	-1.6