Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4638

Experiment: Mannan from Saccharomyces cerevisiae; autoclaved 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT4637 and BT4638 are separated by 16 nucleotidesBT4638 and BT4639 are separated by 79 nucleotidesBT4639 and BT4640 are separated by 150 nucleotides BT4637: BT4637 - putative inorganic phosphate transporter (NCBI ptt file), at 6,072,867 to 6,073,886 BT4637 BT4638: BT4638 - conserved hypothetical protein (NCBI ptt file), at 6,073,903 to 6,074,550 BT4638 BT4639: BT4639 - conserved hypothetical protein, putative membrane protein (NCBI ptt file), at 6,074,630 to 6,075,271 BT4639 BT4640: BT4640 - hypothetical protein (NCBI ptt file), at 6,075,422 to 6,075,862 BT4640 Position (kb) 6073 6074 6075Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 6072.933 kb on - strandat 6072.960 kb on - strandat 6073.029 kb on - strand, within BT4637at 6073.029 kb on - strand, within BT4637at 6073.029 kb on - strand, within BT4637at 6073.040 kb on + strand, within BT4637at 6073.041 kb on - strand, within BT4637at 6073.069 kb on + strand, within BT4637at 6073.103 kb on + strand, within BT4637at 6073.103 kb on + strand, within BT4637at 6073.103 kb on + strand, within BT4637at 6073.125 kb on - strand, within BT4637at 6073.239 kb on + strand, within BT4637at 6073.240 kb on - strand, within BT4637at 6073.272 kb on + strand, within BT4637at 6073.398 kb on - strand, within BT4637at 6073.409 kb on + strand, within BT4637at 6073.410 kb on - strand, within BT4637at 6073.411 kb on + strand, within BT4637at 6073.442 kb on + strand, within BT4637at 6073.509 kb on - strand, within BT4637at 6073.555 kb on - strand, within BT4637at 6073.557 kb on - strand, within BT4637at 6073.643 kb on + strand, within BT4637at 6073.644 kb on - strand, within BT4637at 6073.692 kb on + strand, within BT4637at 6073.708 kb on - strand, within BT4637at 6073.839 kb on - strandat 6073.857 kb on + strandat 6073.858 kb on - strandat 6073.858 kb on - strandat 6073.860 kb on + strandat 6073.861 kb on - strandat 6073.904 kb on + strandat 6073.911 kb on - strandat 6073.998 kb on + strand, within BT4638at 6074.086 kb on + strand, within BT4638at 6074.086 kb on + strand, within BT4638at 6074.087 kb on - strand, within BT4638at 6074.154 kb on + strand, within BT4638at 6074.233 kb on + strand, within BT4638at 6074.239 kb on - strand, within BT4638at 6074.326 kb on - strand, within BT4638at 6074.402 kb on + strand, within BT4638at 6074.483 kb on - strand, within BT4638at 6074.524 kb on - strandat 6074.585 kb on + strandat 6074.667 kb on - strandat 6074.698 kb on + strand, within BT4639at 6074.754 kb on + strand, within BT4639at 6074.763 kb on + strand, within BT4639at 6074.795 kb on + strand, within BT4639at 6074.893 kb on + strand, within BT4639at 6074.911 kb on - strand, within BT4639at 6075.029 kb on + strand, within BT4639at 6075.048 kb on - strand, within BT4639at 6075.172 kb on + strand, within BT4639at 6075.192 kb on + strand, within BT4639at 6075.192 kb on + strand, within BT4639at 6075.192 kb on + strand, within BT4639at 6075.193 kb on - strand, within BT4639at 6075.202 kb on + strand, within BT4639at 6075.218 kb on + strandat 6075.221 kb on - strandat 6075.260 kb on + strandat 6075.263 kb on - strandat 6075.272 kb on + strandat 6075.274 kb on + strandat 6075.275 kb on - strandat 6075.285 kb on - strandat 6075.362 kb on - strandat 6075.386 kb on + strandat 6075.424 kb on - strandat 6075.427 kb on + strandat 6075.461 kb on - strandat 6075.539 kb on + strand, within BT4640at 6075.539 kb on + strand, within BT4640

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Per-strain Table

Position Strand Gene LocusTag Fraction Mannan from Saccharomyces cerevisiae; autoclaved 2.5 mg/ml (C)
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6,072,933 - +1.5
6,072,960 - -1.0
6,073,029 - BT4637 0.16 -1.0
6,073,029 - BT4637 0.16 -4.1
6,073,029 - BT4637 0.16 -1.9
6,073,040 + BT4637 0.17 -0.9
6,073,041 - BT4637 0.17 -1.4
6,073,069 + BT4637 0.20 -1.3
6,073,103 + BT4637 0.23 -2.6
6,073,103 + BT4637 0.23 -0.3
6,073,103 + BT4637 0.23 -1.0
6,073,125 - BT4637 0.25 +0.2
6,073,239 + BT4637 0.36 -1.3
6,073,240 - BT4637 0.37 -2.7
6,073,272 + BT4637 0.40 -0.0
6,073,398 - BT4637 0.52 +1.0
6,073,409 + BT4637 0.53 -1.4
6,073,410 - BT4637 0.53 -0.0
6,073,411 + BT4637 0.53 -2.6
6,073,442 + BT4637 0.56 -0.0
6,073,509 - BT4637 0.63 +1.0
6,073,555 - BT4637 0.67 -0.3
6,073,557 - BT4637 0.68 +0.5
6,073,643 + BT4637 0.76 -1.6
6,073,644 - BT4637 0.76 -0.8
6,073,692 + BT4637 0.81 -2.0
6,073,708 - BT4637 0.82 +1.0
6,073,839 - -0.0
6,073,857 + -3.4
6,073,858 - -0.9
6,073,858 - -0.9
6,073,860 + -0.6
6,073,861 - +0.4
6,073,904 + -0.8
6,073,911 - -0.0
6,073,998 + BT4638 0.15 -0.0
6,074,086 + BT4638 0.28 -1.4
6,074,086 + BT4638 0.28 -0.0
6,074,087 - BT4638 0.28 -0.0
6,074,154 + BT4638 0.39 -0.2
6,074,233 + BT4638 0.51 +1.4
6,074,239 - BT4638 0.52 -0.0
6,074,326 - BT4638 0.65 -1.0
6,074,402 + BT4638 0.77 -0.0
6,074,483 - BT4638 0.90 +1.5
6,074,524 - +1.0
6,074,585 + -2.2
6,074,667 - -2.4
6,074,698 + BT4639 0.11 -1.0
6,074,754 + BT4639 0.19 -1.4
6,074,763 + BT4639 0.21 -0.6
6,074,795 + BT4639 0.26 -1.6
6,074,893 + BT4639 0.41 -1.9
6,074,911 - BT4639 0.44 -2.4
6,075,029 + BT4639 0.62 +2.1
6,075,048 - BT4639 0.65 -1.0
6,075,172 + BT4639 0.84 -1.0
6,075,192 + BT4639 0.88 -1.6
6,075,192 + BT4639 0.88 +1.1
6,075,192 + BT4639 0.88 -1.0
6,075,193 - BT4639 0.88 -1.0
6,075,202 + BT4639 0.89 +1.0
6,075,218 + -2.2
6,075,221 - +1.5
6,075,260 + -1.3
6,075,263 - -2.0
6,075,272 + -0.0
6,075,274 + -3.0
6,075,275 - +1.0
6,075,285 - -0.6
6,075,362 - -0.7
6,075,386 + -1.2
6,075,424 - -1.9
6,075,427 + -0.0
6,075,461 - -0.0
6,075,539 + BT4640 0.27 -0.7
6,075,539 + BT4640 0.27 -2.4

Or see this region's nucleotide sequence