Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1258

Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
1,562,231	+				-1.0
1,562,236	+				-2.0
1,562,238	+				+0.0
1,562,240	+				-0.8
1,562,287	-		BT1257	0.13	+0.0
1,562,292	+		BT1257	0.15	-1.3
1,562,330	+		BT1257	0.23	-0.7
1,562,383	+		BT1257	0.34	-3.0
1,562,446	+		BT1257	0.47	-0.9
1,562,479	+		BT1257	0.54	+0.0
1,562,482	-		BT1257	0.55	-2.0
1,562,577	-		BT1257	0.75	+1.0
1,562,580	+		BT1257	0.76	-1.0
1,562,580	+		BT1257	0.76	-2.0
1,562,581	-		BT1257	0.76	-1.7
1,562,581	-		BT1257	0.76	-0.5
1,562,639	+		BT1257	0.89	-0.5
1,562,653	-				-2.0
1,562,731	-				-0.8
1,562,763	+				+1.0
1,562,820	-				-1.0
1,562,847	-				-1.0
1,562,875	+				+0.0
1,562,888	-				+0.0
1,562,984	+				+0.0
1,562,985	-				-1.0
1,563,047	+				-1.0
1,563,090	-				+1.0
1,563,090	-				+0.0
1,563,113	+				-1.3
1,563,172	+				+0.6
1,563,202	-				+0.8
1,563,202	-				-2.3
1,563,203	+				-0.4
1,563,228	-				-1.6
1,563,250	+				+1.6
1,563,374	-		BT1258	0.33	-3.1
1,563,374	-		BT1258	0.33	+0.0
1,563,481	-		BT1258	0.57	-1.6
1,563,484	+		BT1258	0.57	-2.0
1,563,555	-		BT1258	0.73	-3.6
1,563,597	+		BT1258	0.83	-2.8
1,563,749	-				+0.6
1,563,749	-				-2.3
1,563,905	+				+0.0
1,563,905	+				+1.0
1,563,924	+				-1.6
1,563,999	+				-1.8
1,564,085	-		BT1259	0.16	-1.3
1,564,197	+		BT1259	0.28	+0.0
1,564,240	-		BT1259	0.32	-2.0
1,564,275	-		BT1259	0.36	+0.0
1,564,346	+		BT1259	0.43	+0.0
1,564,352	+		BT1259	0.44	-1.0
1,564,369	-		BT1259	0.45	-3.1
1,564,395	+		BT1259	0.48	+0.0
1,564,416	-		BT1259	0.50	-2.0
1,564,418	-		BT1259	0.50	+0.0
1,564,425	+		BT1259	0.51	-1.6
1,564,433	-		BT1259	0.52	-1.6
1,564,460	-		BT1259	0.55	-0.0
1,564,479	+		BT1259	0.56	-0.6