Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0273 and BT0274 are separated by 26 nucleotides BT0274 and BT0275 are separated by 20 nucleotides
BT0273: BT0273 - Outer membrane binding protein for (+)-arabinogalactan (SusD-like) <small>(from data)</small>, at 313,801 to 315,312
BT0273
BT0274: BT0274 - hypothetical protein (NCBI ptt file), at 315,339 to 316,061
BT0274
BT0275: BT0275 - hypothetical protein (NCBI ptt file), at 316,082 to 317,767
BT0275
Position (kb) 315
316
317 Strain fitness (log2 ratio) -2
-1
0
1 at 314.434 kb on + strand, within BT0273 at 314.546 kb on - strand, within BT0273 at 314.600 kb on - strand, within BT0273 at 314.600 kb on - strand, within BT0273 at 314.763 kb on - strand, within BT0273 at 314.831 kb on + strand, within BT0273 at 314.938 kb on - strand, within BT0273 at 314.987 kb on - strand, within BT0273 at 314.987 kb on - strand, within BT0273 at 315.152 kb on - strand, within BT0273 at 315.155 kb on - strand, within BT0273 at 315.172 kb on - strand at 315.184 kb on + strand at 315.186 kb on + strand at 315.220 kb on - strand at 315.420 kb on - strand, within BT0274 at 315.424 kb on - strand, within BT0274 at 315.467 kb on + strand, within BT0274 at 315.647 kb on + strand, within BT0274 at 315.671 kb on - strand, within BT0274 at 315.738 kb on - strand, within BT0274 at 315.740 kb on - strand, within BT0274 at 315.791 kb on - strand, within BT0274 at 315.809 kb on + strand, within BT0274 at 315.829 kb on - strand, within BT0274 at 315.875 kb on - strand, within BT0274 at 315.876 kb on + strand, within BT0274 at 315.877 kb on - strand, within BT0274 at 315.883 kb on - strand, within BT0274 at 315.901 kb on + strand, within BT0274 at 315.962 kb on - strand, within BT0274 at 316.028 kb on - strand at 316.079 kb on - strand at 316.090 kb on + strand at 316.100 kb on + strand at 316.144 kb on - strand at 316.154 kb on - strand at 316.433 kb on - strand, within BT0275 at 316.433 kb on - strand, within BT0275 at 316.495 kb on - strand, within BT0275 at 316.514 kb on - strand, within BT0275 at 316.571 kb on + strand, within BT0275 at 316.590 kb on - strand, within BT0275 at 316.591 kb on + strand, within BT0275 at 316.637 kb on - strand, within BT0275 at 316.681 kb on - strand, within BT0275 at 316.849 kb on + strand, within BT0275 at 316.860 kb on + strand, within BT0275 at 316.861 kb on - strand, within BT0275 at 316.865 kb on - strand, within BT0275 at 316.865 kb on - strand, within BT0275 at 316.868 kb on - strand, within BT0275 at 316.889 kb on - strand, within BT0275 at 316.922 kb on - strand, within BT0275 at 317.024 kb on - strand, within BT0275 at 317.045 kb on - strand, within BT0275
Per-strain Table
Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) remove 314,434 + BT0273 0.42 -1.7 314,546 - BT0273 0.49 -1.6 314,600 - BT0273 0.53 +0.0 314,600 - BT0273 0.53 +0.0 314,763 - BT0273 0.64 +0.6 314,831 + BT0273 0.68 -1.2 314,938 - BT0273 0.75 -0.3 314,987 - BT0273 0.78 -1.0 314,987 - BT0273 0.78 +0.5 315,152 - BT0273 0.89 -0.6 315,155 - BT0273 0.90 -1.6 315,172 - +0.0 315,184 + -1.4 315,186 + -0.7 315,220 - -1.7 315,420 - BT0274 0.11 -0.4 315,424 - BT0274 0.12 +0.0 315,467 + BT0274 0.18 -1.4 315,647 + BT0274 0.43 -1.6 315,671 - BT0274 0.46 -1.6 315,738 - BT0274 0.55 -0.7 315,740 - BT0274 0.55 +0.1 315,791 - BT0274 0.63 -0.3 315,809 + BT0274 0.65 -0.6 315,829 - BT0274 0.68 +1.0 315,875 - BT0274 0.74 +1.0 315,876 + BT0274 0.74 +0.4 315,877 - BT0274 0.74 -1.4 315,883 - BT0274 0.75 +0.0 315,901 + BT0274 0.78 -2.3 315,962 - BT0274 0.86 -0.6 316,028 - -0.3 316,079 - -0.6 316,090 + -2.6 316,100 + +0.0 316,144 - -0.4 316,154 - -1.2 316,433 - BT0275 0.21 +0.0 316,433 - BT0275 0.21 -0.3 316,495 - BT0275 0.24 +0.9 316,514 - BT0275 0.26 +0.0 316,571 + BT0275 0.29 +0.0 316,590 - BT0275 0.30 +0.6 316,591 + BT0275 0.30 -1.6 316,637 - BT0275 0.33 -0.2 316,681 - BT0275 0.36 -0.2 316,849 + BT0275 0.45 -1.6 316,860 + BT0275 0.46 -1.2 316,861 - BT0275 0.46 -0.2 316,865 - BT0275 0.46 -1.0 316,865 - BT0275 0.46 -0.6 316,868 - BT0275 0.47 +1.0 316,889 - BT0275 0.48 -1.7 316,922 - BT0275 0.50 +0.0 317,024 - BT0275 0.56 -0.8 317,045 - BT0275 0.57 +1.0
Or see this region's nucleotide sequence