Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0361 and BT0362 are separated by 25 nucleotides BT0362 and BT0363 are separated by 4 nucleotides
BT0361: BT0361 - hypothetical protein (NCBI ptt file), at 433,972 to 435,777
BT0361
BT0362: BT0362 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 435,803 to 438,952
BT0362
BT0363: BT0363 - putative outer membrane protein (NCBI ptt file), at 438,957 to 440,732
BT0363
Position (kb) 435
436
437
438
439 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 434.876 kb on + strand, within BT0361 at 434.876 kb on + strand, within BT0361 at 434.876 kb on + strand at 434.928 kb on + strand, within BT0361 at 434.929 kb on - strand, within BT0361 at 434.933 kb on + strand, within BT0361 at 434.933 kb on + strand, within BT0361 at 435.050 kb on + strand, within BT0361 at 435.078 kb on - strand, within BT0361 at 435.298 kb on + strand, within BT0361 at 435.384 kb on + strand, within BT0361 at 435.423 kb on + strand, within BT0361 at 435.445 kb on + strand, within BT0361 at 435.491 kb on + strand, within BT0361 at 435.556 kb on - strand, within BT0361 at 435.556 kb on - strand, within BT0361 at 435.758 kb on + strand at 435.758 kb on + strand at 435.860 kb on - strand at 435.861 kb on + strand at 435.952 kb on + strand at 436.053 kb on + strand at 436.545 kb on + strand, within BT0362 at 436.607 kb on - strand, within BT0362 at 436.881 kb on + strand, within BT0362 at 436.881 kb on + strand, within BT0362 at 436.884 kb on - strand, within BT0362 at 436.995 kb on + strand, within BT0362 at 437.109 kb on + strand, within BT0362 at 437.113 kb on + strand, within BT0362 at 437.150 kb on - strand, within BT0362 at 437.165 kb on + strand, within BT0362 at 437.169 kb on + strand, within BT0362 at 437.173 kb on + strand at 437.188 kb on - strand, within BT0362 at 437.282 kb on - strand, within BT0362 at 437.282 kb on - strand, within BT0362 at 437.290 kb on - strand, within BT0362 at 437.325 kb on + strand, within BT0362 at 437.382 kb on + strand, within BT0362 at 437.386 kb on + strand, within BT0362 at 437.473 kb on - strand, within BT0362 at 437.473 kb on - strand, within BT0362 at 437.554 kb on - strand at 437.635 kb on + strand, within BT0362 at 437.668 kb on - strand, within BT0362 at 437.698 kb on + strand, within BT0362 at 437.711 kb on + strand, within BT0362 at 437.712 kb on - strand, within BT0362 at 437.712 kb on - strand, within BT0362 at 437.734 kb on + strand, within BT0362 at 437.826 kb on - strand, within BT0362 at 437.910 kb on + strand, within BT0362 at 437.914 kb on - strand, within BT0362 at 438.135 kb on + strand, within BT0362 at 438.135 kb on + strand, within BT0362 at 438.142 kb on - strand, within BT0362 at 438.209 kb on - strand, within BT0362 at 438.240 kb on - strand, within BT0362 at 438.273 kb on + strand, within BT0362 at 438.274 kb on - strand, within BT0362 at 438.277 kb on + strand, within BT0362 at 438.308 kb on - strand, within BT0362 at 438.417 kb on + strand, within BT0362 at 438.418 kb on - strand, within BT0362 at 438.418 kb on - strand, within BT0362 at 438.422 kb on - strand, within BT0362 at 438.460 kb on - strand, within BT0362 at 438.460 kb on - strand, within BT0362 at 438.460 kb on - strand, within BT0362 at 438.467 kb on + strand, within BT0362 at 438.467 kb on + strand, within BT0362 at 438.468 kb on - strand, within BT0362 at 438.610 kb on - strand, within BT0362 at 438.696 kb on - strand at 438.958 kb on + strand at 438.999 kb on + strand at 439.065 kb on - strand at 439.115 kb on + strand at 439.155 kb on + strand, within BT0363 at 439.155 kb on + strand, within BT0363 at 439.308 kb on + strand, within BT0363 at 439.351 kb on + strand, within BT0363 at 439.397 kb on - strand, within BT0363 at 439.523 kb on + strand, within BT0363 at 439.549 kb on + strand, within BT0363 at 439.708 kb on + strand, within BT0363 at 439.800 kb on + strand, within BT0363 at 439.868 kb on + strand, within BT0363
Per-strain Table
Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) remove 434,876 + BT0361 0.50 +0.4 434,876 + BT0361 0.50 -2.0 434,876 + -0.0 434,928 + BT0361 0.53 -0.5 434,929 - BT0361 0.53 -1.7 434,933 + BT0361 0.53 -1.4 434,933 + BT0361 0.53 -0.0 435,050 + BT0361 0.60 -1.8 435,078 - BT0361 0.61 -1.6 435,298 + BT0361 0.73 -1.6 435,384 + BT0361 0.78 -0.5 435,423 + BT0361 0.80 -1.1 435,445 + BT0361 0.82 -2.4 435,491 + BT0361 0.84 -0.0 435,556 - BT0361 0.88 -0.8 435,556 - BT0361 0.88 -1.4 435,758 + -2.0 435,758 + -2.4 435,860 - -1.4 435,861 + -1.0 435,952 + -0.0 436,053 + -1.6 436,545 + BT0362 0.24 -0.5 436,607 - BT0362 0.26 -1.0 436,881 + BT0362 0.34 -0.7 436,881 + BT0362 0.34 -2.1 436,884 - BT0362 0.34 -1.5 436,995 + BT0362 0.38 -2.4 437,109 + BT0362 0.41 +1.0 437,113 + BT0362 0.42 -2.5 437,150 - BT0362 0.43 -0.6 437,165 + BT0362 0.43 -1.5 437,169 + BT0362 0.43 -3.6 437,173 + -2.0 437,188 - BT0362 0.44 -1.3 437,282 - BT0362 0.47 -1.0 437,282 - BT0362 0.47 -1.6 437,290 - BT0362 0.47 -1.0 437,325 + BT0362 0.48 -0.0 437,382 + BT0362 0.50 -1.6 437,386 + BT0362 0.50 -1.4 437,473 - BT0362 0.53 -2.6 437,473 - BT0362 0.53 -2.9 437,554 - -1.6 437,635 + BT0362 0.58 +1.0 437,668 - BT0362 0.59 -2.9 437,698 + BT0362 0.60 +0.4 437,711 + BT0362 0.61 -1.4 437,712 - BT0362 0.61 -1.6 437,712 - BT0362 0.61 -0.0 437,734 + BT0362 0.61 +0.5 437,826 - BT0362 0.64 +1.5 437,910 + BT0362 0.67 -0.6 437,914 - BT0362 0.67 -0.0 438,135 + BT0362 0.74 +0.5 438,135 + BT0362 0.74 -0.0 438,142 - BT0362 0.74 -0.0 438,209 - BT0362 0.76 -2.0 438,240 - BT0362 0.77 -1.4 438,273 + BT0362 0.78 -0.5 438,274 - BT0362 0.78 -2.3 438,277 + BT0362 0.79 -1.0 438,308 - BT0362 0.80 -1.8 438,417 + BT0362 0.83 -1.4 438,418 - BT0362 0.83 -0.0 438,418 - BT0362 0.83 -1.6 438,422 - BT0362 0.83 -1.6 438,460 - BT0362 0.84 -0.0 438,460 - BT0362 0.84 -1.4 438,460 - BT0362 0.84 -0.0 438,467 + BT0362 0.85 -2.4 438,467 + BT0362 0.85 -1.0 438,468 - BT0362 0.85 +1.5 438,610 - BT0362 0.89 +1.0 438,696 - -0.0 438,958 + -0.0 438,999 + -0.9 439,065 - -0.0 439,115 + -0.0 439,155 + BT0363 0.11 +1.3 439,155 + BT0363 0.11 -2.9 439,308 + BT0363 0.20 -0.0 439,351 + BT0363 0.22 -2.4 439,397 - BT0363 0.25 -0.6 439,523 + BT0363 0.32 -0.0 439,549 + BT0363 0.33 -1.6 439,708 + BT0363 0.42 -1.8 439,800 + BT0363 0.47 -2.0 439,868 + BT0363 0.51 -0.0
Or see this region's nucleotide sequence