Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0079 and BT0080 are separated by 43 nucleotides BT0080 and BT0081 are separated by 24 nucleotides BT0081 and BT0082 are separated by 97 nucleotides BT0082 and BT0083 are separated by 73 nucleotides
BT0079: BT0079 - putative anti-restriction protein (NCBI ptt file), at 76,009 to 76,542
BT0079
BT0080: BT0080 - hypothetical protein (NCBI ptt file), at 76,586 to 76,798
BT0080
BT0081: BT0081 - hypothetical protein (NCBI ptt file), at 76,823 to 77,017
BT0081
BT0082: BT0082 - hypothetical protein (NCBI ptt file), at 77,115 to 78,035
BT0082
BT0083: BT0083 - conserved hypothetical protein (NCBI ptt file), at 78,109 to 78,975
BT0083
Position (kb) 77
78
79 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 76.329 kb on - strand, within BT0079 at 76.329 kb on - strand, within BT0079 at 76.329 kb on - strand, within BT0079 at 76.354 kb on - strand, within BT0079 at 76.388 kb on - strand, within BT0079 at 76.412 kb on - strand, within BT0079 at 76.459 kb on + strand, within BT0079 at 76.495 kb on - strand at 76.504 kb on + strand at 76.544 kb on + strand at 76.601 kb on - strand at 76.601 kb on - strand at 76.647 kb on - strand, within BT0080 at 76.687 kb on - strand, within BT0080 at 76.691 kb on - strand, within BT0080 at 76.792 kb on + strand at 76.809 kb on + strand at 76.819 kb on + strand at 76.820 kb on - strand at 76.822 kb on + strand at 76.881 kb on - strand, within BT0081 at 76.885 kb on + strand, within BT0081 at 76.956 kb on + strand, within BT0081 at 76.964 kb on - strand, within BT0081 at 76.973 kb on - strand, within BT0081 at 77.107 kb on - strand at 77.110 kb on + strand at 77.171 kb on + strand at 77.193 kb on + strand at 77.193 kb on + strand at 77.213 kb on + strand, within BT0082 at 77.215 kb on + strand, within BT0082 at 77.216 kb on - strand, within BT0082 at 77.218 kb on - strand, within BT0082 at 77.218 kb on - strand, within BT0082 at 77.219 kb on + strand, within BT0082 at 77.219 kb on + strand, within BT0082 at 77.219 kb on + strand, within BT0082 at 77.220 kb on - strand, within BT0082 at 77.220 kb on - strand, within BT0082 at 77.220 kb on - strand, within BT0082 at 77.225 kb on + strand, within BT0082 at 77.282 kb on + strand, within BT0082 at 77.288 kb on + strand, within BT0082 at 77.312 kb on + strand, within BT0082 at 77.351 kb on - strand, within BT0082 at 77.376 kb on - strand, within BT0082 at 77.376 kb on - strand, within BT0082 at 77.385 kb on + strand, within BT0082 at 77.427 kb on - strand, within BT0082 at 77.430 kb on - strand, within BT0082 at 77.460 kb on + strand, within BT0082 at 77.471 kb on - strand, within BT0082 at 77.478 kb on - strand, within BT0082 at 77.481 kb on + strand, within BT0082 at 77.519 kb on + strand, within BT0082 at 77.519 kb on + strand, within BT0082 at 77.520 kb on - strand, within BT0082 at 77.520 kb on - strand, within BT0082 at 77.583 kb on + strand, within BT0082 at 77.584 kb on - strand, within BT0082 at 77.589 kb on + strand, within BT0082 at 77.589 kb on + strand, within BT0082 at 77.590 kb on - strand, within BT0082 at 77.590 kb on - strand, within BT0082 at 77.591 kb on + strand, within BT0082 at 77.591 kb on + strand, within BT0082 at 77.602 kb on - strand, within BT0082 at 77.608 kb on - strand, within BT0082 at 77.628 kb on + strand, within BT0082 at 77.654 kb on + strand, within BT0082 at 77.706 kb on + strand, within BT0082 at 77.709 kb on - strand, within BT0082 at 77.776 kb on + strand, within BT0082 at 77.801 kb on + strand, within BT0082 at 77.802 kb on - strand, within BT0082 at 77.825 kb on + strand, within BT0082 at 77.866 kb on - strand, within BT0082 at 77.866 kb on - strand, within BT0082 at 77.901 kb on - strand, within BT0082 at 77.905 kb on - strand, within BT0082 at 77.924 kb on + strand, within BT0082 at 77.947 kb on + strand at 78.005 kb on - strand at 78.005 kb on - strand at 78.006 kb on + strand at 78.011 kb on + strand at 78.011 kb on + strand at 78.012 kb on - strand at 78.016 kb on - strand at 78.035 kb on + strand at 78.042 kb on - strand at 78.072 kb on + strand at 78.156 kb on + strand at 78.253 kb on - strand, within BT0083 at 78.275 kb on - strand, within BT0083 at 78.276 kb on + strand, within BT0083 at 78.288 kb on + strand, within BT0083 at 78.289 kb on - strand, within BT0083 at 78.345 kb on + strand, within BT0083 at 78.345 kb on + strand, within BT0083 at 78.377 kb on + strand, within BT0083 at 78.379 kb on + strand, within BT0083 at 78.379 kb on + strand, within BT0083 at 78.391 kb on + strand, within BT0083 at 78.392 kb on - strand, within BT0083 at 78.408 kb on - strand, within BT0083 at 78.491 kb on - strand, within BT0083 at 78.499 kb on - strand, within BT0083 at 78.502 kb on - strand, within BT0083 at 78.518 kb on - strand, within BT0083 at 78.546 kb on - strand, within BT0083 at 78.556 kb on - strand, within BT0083 at 78.559 kb on - strand, within BT0083 at 78.575 kb on + strand, within BT0083 at 78.577 kb on + strand, within BT0083 at 78.578 kb on - strand, within BT0083 at 78.593 kb on - strand, within BT0083 at 78.613 kb on + strand, within BT0083 at 78.613 kb on + strand, within BT0083 at 78.622 kb on + strand, within BT0083 at 78.690 kb on - strand, within BT0083 at 78.692 kb on + strand, within BT0083 at 78.692 kb on + strand, within BT0083 at 78.733 kb on + strand, within BT0083 at 78.733 kb on + strand, within BT0083 at 78.733 kb on + strand, within BT0083 at 78.734 kb on - strand, within BT0083 at 78.763 kb on + strand, within BT0083 at 78.775 kb on + strand, within BT0083 at 78.776 kb on - strand, within BT0083 at 78.792 kb on + strand, within BT0083 at 78.792 kb on + strand, within BT0083 at 78.830 kb on + strand, within BT0083 at 78.831 kb on - strand, within BT0083 at 78.841 kb on - strand, within BT0083
Per-strain Table
Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) remove 76,329 - BT0079 0.60 -2.2 76,329 - BT0079 0.60 -0.0 76,329 - BT0079 0.60 -1.0 76,354 - BT0079 0.65 -0.0 76,388 - BT0079 0.71 -0.0 76,412 - BT0079 0.75 -1.0 76,459 + BT0079 0.84 +1.6 76,495 - -0.7 76,504 + -0.4 76,544 + -1.0 76,601 - -0.0 76,601 - +0.7 76,647 - BT0080 0.29 +0.8 76,687 - BT0080 0.47 -1.0 76,691 - BT0080 0.49 -0.4 76,792 + -0.6 76,809 + -0.4 76,819 + -2.6 76,820 - -1.9 76,822 + -1.6 76,881 - BT0081 0.30 -2.6 76,885 + BT0081 0.32 +0.4 76,956 + BT0081 0.68 -2.0 76,964 - BT0081 0.72 -0.0 76,973 - BT0081 0.77 -1.6 77,107 - -0.4 77,110 + -0.0 77,171 + -0.0 77,193 + +1.6 77,193 + -0.0 77,213 + BT0082 0.11 -0.6 77,215 + BT0082 0.11 -0.0 77,216 - BT0082 0.11 -1.0 77,218 - BT0082 0.11 -1.0 77,218 - BT0082 0.11 -0.5 77,219 + BT0082 0.11 -1.3 77,219 + BT0082 0.11 -0.0 77,219 + BT0082 0.11 -1.0 77,220 - BT0082 0.11 -0.2 77,220 - BT0082 0.11 -0.8 77,220 - BT0082 0.11 -0.7 77,225 + BT0082 0.12 -0.0 77,282 + BT0082 0.18 -0.8 77,288 + BT0082 0.19 -0.0 77,312 + BT0082 0.21 -0.2 77,351 - BT0082 0.26 -1.2 77,376 - BT0082 0.28 -0.6 77,376 - BT0082 0.28 +1.0 77,385 + BT0082 0.29 -0.0 77,427 - BT0082 0.34 +0.6 77,430 - BT0082 0.34 -0.6 77,460 + BT0082 0.37 -0.7 77,471 - BT0082 0.39 -0.8 77,478 - BT0082 0.39 -0.0 77,481 + BT0082 0.40 -0.8 77,519 + BT0082 0.44 -1.0 77,519 + BT0082 0.44 -1.3 77,520 - BT0082 0.44 -0.3 77,520 - BT0082 0.44 -2.3 77,583 + BT0082 0.51 -0.4 77,584 - BT0082 0.51 -0.5 77,589 + BT0082 0.51 -1.0 77,589 + BT0082 0.51 -0.0 77,590 - BT0082 0.52 +0.3 77,590 - BT0082 0.52 +1.0 77,591 + BT0082 0.52 -0.8 77,591 + BT0082 0.52 +1.0 77,602 - BT0082 0.53 -0.0 77,608 - BT0082 0.54 -0.8 77,628 + BT0082 0.56 -0.8 77,654 + BT0082 0.59 -0.0 77,706 + BT0082 0.64 -0.5 77,709 - BT0082 0.64 -0.9 77,776 + BT0082 0.72 -0.2 77,801 + BT0082 0.74 -0.0 77,802 - BT0082 0.75 -0.0 77,825 + BT0082 0.77 -1.0 77,866 - BT0082 0.82 -1.3 77,866 - BT0082 0.82 -1.0 77,901 - BT0082 0.85 -0.6 77,905 - BT0082 0.86 +1.0 77,924 + BT0082 0.88 +0.1 77,947 + -0.7 78,005 - -0.6 78,005 - -2.3 78,006 + +1.0 78,011 + -1.0 78,011 + -0.0 78,012 - -0.8 78,016 - -1.0 78,035 + -2.0 78,042 - -2.0 78,072 + +1.3 78,156 + -0.6 78,253 - BT0083 0.17 -0.0 78,275 - BT0083 0.19 -0.6 78,276 + BT0083 0.19 -0.0 78,288 + BT0083 0.21 -0.6 78,289 - BT0083 0.21 -0.0 78,345 + BT0083 0.27 -0.0 78,345 + BT0083 0.27 -0.4 78,377 + BT0083 0.31 -0.0 78,379 + BT0083 0.31 -0.0 78,379 + BT0083 0.31 -1.2 78,391 + BT0083 0.33 +0.4 78,392 - BT0083 0.33 -0.5 78,408 - BT0083 0.34 -1.0 78,491 - BT0083 0.44 -1.6 78,499 - BT0083 0.45 -0.0 78,502 - BT0083 0.45 -0.7 78,518 - BT0083 0.47 -1.0 78,546 - BT0083 0.50 -1.3 78,556 - BT0083 0.52 -1.8 78,559 - BT0083 0.52 +0.6 78,575 + BT0083 0.54 -0.6 78,577 + BT0083 0.54 -1.1 78,578 - BT0083 0.54 -1.3 78,593 - BT0083 0.56 -0.3 78,613 + BT0083 0.58 -0.6 78,613 + BT0083 0.58 +1.6 78,622 + BT0083 0.59 -0.0 78,690 - BT0083 0.67 -0.4 78,692 + BT0083 0.67 -0.4 78,692 + BT0083 0.67 -1.6 78,733 + BT0083 0.72 -2.0 78,733 + BT0083 0.72 -1.0 78,733 + BT0083 0.72 -2.0 78,734 - BT0083 0.72 -0.0 78,763 + BT0083 0.75 -3.0 78,775 + BT0083 0.77 +1.0 78,776 - BT0083 0.77 -0.7 78,792 + BT0083 0.79 -1.2 78,792 + BT0083 0.79 -0.0 78,830 + BT0083 0.83 +0.3 78,831 - BT0083 0.83 -1.0 78,841 - BT0083 0.84 -1.8
Or see this region's nucleotide sequence