Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS05655 and BWI76_RS05660 are separated by 10 nucleotides BWI76_RS05660 and BWI76_RS05665 are separated by 17 nucleotides BWI76_RS05665 and BWI76_RS05670 are separated by 103 nucleotides
BWI76_RS05655: BWI76_RS05655 - hypothetical protein, at 1,188,163 to 1,188,420
_RS05655
BWI76_RS05660: BWI76_RS05660 - N-acetyltransferase, at 1,188,431 to 1,188,982
_RS05660
BWI76_RS05665: BWI76_RS05665 - SAM-dependent methyltransferase, at 1,189,000 to 1,190,628
_RS05665
BWI76_RS05670: BWI76_RS05670 - porin, at 1,190,732 to 1,192,072
_RS05670
Position (kb) 1188
1189
1190
1191 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8 at 1188.010 kb on + strand at 1188.204 kb on + strand, within BWI76_RS05655 at 1188.368 kb on - strand, within BWI76_RS05655 at 1188.377 kb on - strand, within BWI76_RS05655 at 1188.494 kb on + strand, within BWI76_RS05660 at 1188.494 kb on + strand, within BWI76_RS05660 at 1188.637 kb on + strand, within BWI76_RS05660 at 1188.680 kb on - strand, within BWI76_RS05660 at 1188.680 kb on - strand, within BWI76_RS05660 at 1188.725 kb on + strand, within BWI76_RS05660 at 1188.741 kb on + strand, within BWI76_RS05660 at 1188.741 kb on + strand, within BWI76_RS05660 at 1188.751 kb on + strand, within BWI76_RS05660 at 1188.785 kb on - strand, within BWI76_RS05660 at 1188.816 kb on + strand, within BWI76_RS05660 at 1188.824 kb on - strand, within BWI76_RS05660 at 1188.844 kb on - strand, within BWI76_RS05660 at 1188.853 kb on + strand, within BWI76_RS05660 at 1188.955 kb on + strand at 1189.046 kb on + strand at 1189.360 kb on - strand, within BWI76_RS05665 at 1189.504 kb on + strand, within BWI76_RS05665 at 1189.512 kb on - strand, within BWI76_RS05665 at 1189.585 kb on + strand, within BWI76_RS05665 at 1189.619 kb on - strand, within BWI76_RS05665 at 1189.647 kb on + strand, within BWI76_RS05665 at 1189.754 kb on + strand, within BWI76_RS05665 at 1189.968 kb on - strand, within BWI76_RS05665 at 1189.999 kb on - strand, within BWI76_RS05665 at 1190.044 kb on - strand, within BWI76_RS05665 at 1190.044 kb on - strand, within BWI76_RS05665 at 1190.254 kb on - strand, within BWI76_RS05665 at 1190.480 kb on + strand at 1190.654 kb on - strand at 1190.815 kb on + strand at 1190.835 kb on - strand at 1190.853 kb on + strand at 1190.853 kb on + strand at 1190.853 kb on + strand at 1190.945 kb on - strand, within BWI76_RS05670 at 1190.999 kb on + strand, within BWI76_RS05670 at 1191.166 kb on - strand, within BWI76_RS05670 at 1191.264 kb on + strand, within BWI76_RS05670 at 1191.481 kb on + strand, within BWI76_RS05670 at 1191.500 kb on - strand, within BWI76_RS05670 at 1191.603 kb on - strand, within BWI76_RS05670
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 1,188,010 + -0.5 1,188,204 + BWI76_RS05655 0.16 -0.7 1,188,368 - BWI76_RS05655 0.79 -0.5 1,188,377 - BWI76_RS05655 0.83 -0.7 1,188,494 + BWI76_RS05660 0.11 -0.1 1,188,494 + BWI76_RS05660 0.11 -0.9 1,188,637 + BWI76_RS05660 0.37 -0.7 1,188,680 - BWI76_RS05660 0.45 -2.5 1,188,680 - BWI76_RS05660 0.45 +8.3 1,188,725 + BWI76_RS05660 0.53 +0.0 1,188,741 + BWI76_RS05660 0.56 -0.2 1,188,741 + BWI76_RS05660 0.56 -0.1 1,188,751 + BWI76_RS05660 0.58 -0.5 1,188,785 - BWI76_RS05660 0.64 +0.0 1,188,816 + BWI76_RS05660 0.70 +1.8 1,188,824 - BWI76_RS05660 0.71 +0.0 1,188,844 - BWI76_RS05660 0.75 +0.3 1,188,853 + BWI76_RS05660 0.76 -1.9 1,188,955 + -0.3 1,189,046 + -0.7 1,189,360 - BWI76_RS05665 0.22 -0.5 1,189,504 + BWI76_RS05665 0.31 -0.2 1,189,512 - BWI76_RS05665 0.31 -0.2 1,189,585 + BWI76_RS05665 0.36 +0.1 1,189,619 - BWI76_RS05665 0.38 -1.7 1,189,647 + BWI76_RS05665 0.40 -0.6 1,189,754 + BWI76_RS05665 0.46 -2.3 1,189,968 - BWI76_RS05665 0.59 -1.3 1,189,999 - BWI76_RS05665 0.61 +1.6 1,190,044 - BWI76_RS05665 0.64 -0.5 1,190,044 - BWI76_RS05665 0.64 +0.2 1,190,254 - BWI76_RS05665 0.77 -0.7 1,190,480 + -1.9 1,190,654 - +1.2 1,190,815 + +3.2 1,190,835 - -0.1 1,190,853 + -0.4 1,190,853 + -0.1 1,190,853 + -0.6 1,190,945 - BWI76_RS05670 0.16 +0.0 1,190,999 + BWI76_RS05670 0.20 +0.2 1,191,166 - BWI76_RS05670 0.32 +0.0 1,191,264 + BWI76_RS05670 0.40 -0.4 1,191,481 + BWI76_RS05670 0.56 +1.1 1,191,500 - BWI76_RS05670 0.57 -0.5 1,191,603 - BWI76_RS05670 0.65 -0.5
Or see this region's nucleotide sequence