Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03085 and BWI76_RS03090 are separated by 526 nucleotides BWI76_RS03090 and BWI76_RS03095 are separated by 48 nucleotides
BWI76_RS03085: BWI76_RS03085 - 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) <small>(from data)</small>, at 632,739 to 634,652
_RS03085
BWI76_RS03090: BWI76_RS03090 - 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) <small>(from data)</small>, at 635,179 to 637,119
_RS03090
BWI76_RS03095: BWI76_RS03095 - Inositol 2-dehydrogenase (EC 1.1.1.18) <small>(from data)</small>, at 637,168 to 638,181
_RS03095
Position (kb) 635
636
637
638 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 634.214 kb on - strand, within BWI76_RS03085 at 634.301 kb on - strand, within BWI76_RS03085 at 634.422 kb on + strand, within BWI76_RS03085 at 634.430 kb on - strand, within BWI76_RS03085 at 634.430 kb on - strand, within BWI76_RS03085 at 634.562 kb on + strand at 634.573 kb on + strand at 634.979 kb on - strand at 634.997 kb on + strand at 634.997 kb on + strand at 635.118 kb on + strand at 635.226 kb on + strand at 635.325 kb on - strand at 635.661 kb on + strand, within BWI76_RS03090 at 635.684 kb on - strand, within BWI76_RS03090 at 635.746 kb on + strand, within BWI76_RS03090 at 635.840 kb on - strand, within BWI76_RS03090 at 635.940 kb on + strand at 635.974 kb on + strand, within BWI76_RS03090 at 635.982 kb on - strand, within BWI76_RS03090 at 636.049 kb on - strand, within BWI76_RS03090 at 636.326 kb on + strand, within BWI76_RS03090 at 636.425 kb on + strand, within BWI76_RS03090 at 636.610 kb on - strand, within BWI76_RS03090 at 636.627 kb on - strand, within BWI76_RS03090 at 636.701 kb on + strand, within BWI76_RS03090 at 636.701 kb on + strand, within BWI76_RS03090 at 636.701 kb on + strand, within BWI76_RS03090 at 636.701 kb on + strand, within BWI76_RS03090 at 636.701 kb on + strand, within BWI76_RS03090 at 636.703 kb on + strand, within BWI76_RS03090 at 636.709 kb on - strand, within BWI76_RS03090 at 636.709 kb on - strand, within BWI76_RS03090 at 636.709 kb on - strand, within BWI76_RS03090 at 636.848 kb on + strand, within BWI76_RS03090 at 636.985 kb on - strand at 637.410 kb on - strand, within BWI76_RS03095 at 637.439 kb on + strand, within BWI76_RS03095 at 637.923 kb on + strand, within BWI76_RS03095
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 634,214 - BWI76_RS03085 0.77 +3.3 634,301 - BWI76_RS03085 0.82 +0.3 634,422 + BWI76_RS03085 0.88 -2.0 634,430 - BWI76_RS03085 0.88 -0.6 634,430 - BWI76_RS03085 0.88 -0.5 634,562 + +2.3 634,573 + +0.3 634,979 - -0.0 634,997 + -0.8 634,997 + -0.1 635,118 + -1.1 635,226 + +1.6 635,325 - +0.4 635,661 + BWI76_RS03090 0.25 -0.1 635,684 - BWI76_RS03090 0.26 +0.3 635,746 + BWI76_RS03090 0.29 -0.1 635,840 - BWI76_RS03090 0.34 -0.6 635,940 + +3.1 635,974 + BWI76_RS03090 0.41 -0.4 635,982 - BWI76_RS03090 0.41 +0.9 636,049 - BWI76_RS03090 0.45 -0.2 636,326 + BWI76_RS03090 0.59 +0.3 636,425 + BWI76_RS03090 0.64 -0.7 636,610 - BWI76_RS03090 0.74 +0.1 636,627 - BWI76_RS03090 0.75 -0.7 636,701 + BWI76_RS03090 0.78 -0.1 636,701 + BWI76_RS03090 0.78 -0.8 636,701 + BWI76_RS03090 0.78 +0.4 636,701 + BWI76_RS03090 0.78 +1.7 636,701 + BWI76_RS03090 0.78 +1.3 636,703 + BWI76_RS03090 0.79 -0.0 636,709 - BWI76_RS03090 0.79 -0.8 636,709 - BWI76_RS03090 0.79 +0.8 636,709 - BWI76_RS03090 0.79 -1.2 636,848 + BWI76_RS03090 0.86 +0.3 636,985 - +0.0 637,410 - BWI76_RS03095 0.24 +0.2 637,439 + BWI76_RS03095 0.27 +0.2 637,923 + BWI76_RS03095 0.74 +0.0
Or see this region's nucleotide sequence