Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26975 and BWI76_RS26980 are separated by 262 nucleotides BWI76_RS26980 and BWI76_RS26985 are separated by 98 nucleotides BWI76_RS26985 and BWI76_RS26990 are separated by 303 nucleotides BWI76_RS26990 and BWI76_RS26995 are separated by 268 nucleotides
BWI76_RS26975: BWI76_RS26975 - transcriptional regulator, at 5,596,554 to 5,596,847
_RS26975
BWI76_RS26980: BWI76_RS26980 - cold-shock protein, at 5,597,110 to 5,597,322
_RS26980
BWI76_RS26985: BWI76_RS26985 - ABC transporter ATP-binding protein, at 5,597,421 to 5,599,040
_RS26985
BWI76_RS26990: BWI76_RS26990 - protein HokA, at 5,599,344 to 5,599,556
_RS26990
BWI76_RS26995: BWI76_RS26995 - glycine--tRNA ligase subunit beta, at 5,599,825 to 5,601,894
_RS26995
Position (kb) 5597
5598
5599
5600 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 5596.508 kb on + strand at 5596.508 kb on + strand at 5596.591 kb on + strand, within BWI76_RS26975 at 5596.684 kb on + strand, within BWI76_RS26975 at 5596.692 kb on - strand, within BWI76_RS26975 at 5596.729 kb on + strand, within BWI76_RS26975 at 5596.729 kb on + strand, within BWI76_RS26975 at 5596.729 kb on + strand, within BWI76_RS26975 at 5596.740 kb on - strand, within BWI76_RS26975 at 5596.748 kb on - strand, within BWI76_RS26975 at 5596.748 kb on - strand, within BWI76_RS26975 at 5596.763 kb on + strand, within BWI76_RS26975 at 5596.763 kb on + strand, within BWI76_RS26975 at 5596.771 kb on - strand, within BWI76_RS26975 at 5596.772 kb on - strand, within BWI76_RS26975 at 5596.774 kb on + strand, within BWI76_RS26975 at 5596.782 kb on - strand, within BWI76_RS26975 at 5596.782 kb on - strand, within BWI76_RS26975 at 5596.782 kb on - strand, within BWI76_RS26975 at 5596.784 kb on + strand, within BWI76_RS26975 at 5596.784 kb on + strand, within BWI76_RS26975 at 5596.788 kb on + strand, within BWI76_RS26975 at 5596.802 kb on + strand, within BWI76_RS26975 at 5596.820 kb on + strand at 5596.828 kb on - strand at 5596.953 kb on + strand at 5596.989 kb on - strand at 5597.063 kb on + strand at 5597.063 kb on + strand at 5597.071 kb on - strand at 5597.159 kb on + strand, within BWI76_RS26980 at 5597.208 kb on + strand, within BWI76_RS26980 at 5597.216 kb on - strand, within BWI76_RS26980 at 5597.218 kb on + strand, within BWI76_RS26980 at 5597.218 kb on + strand at 5597.637 kb on + strand, within BWI76_RS26985 at 5597.645 kb on - strand, within BWI76_RS26985 at 5597.649 kb on + strand, within BWI76_RS26985 at 5597.824 kb on - strand at 5598.044 kb on + strand, within BWI76_RS26985 at 5598.565 kb on + strand, within BWI76_RS26985 at 5598.570 kb on + strand, within BWI76_RS26985 at 5598.570 kb on + strand, within BWI76_RS26985 at 5598.578 kb on + strand, within BWI76_RS26985 at 5598.727 kb on + strand, within BWI76_RS26985 at 5598.817 kb on + strand, within BWI76_RS26985 at 5598.846 kb on - strand, within BWI76_RS26985 at 5598.864 kb on + strand, within BWI76_RS26985 at 5598.979 kb on - strand at 5599.054 kb on - strand at 5599.084 kb on - strand at 5599.089 kb on + strand at 5599.089 kb on + strand at 5599.111 kb on + strand at 5599.148 kb on - strand at 5599.149 kb on + strand at 5599.163 kb on + strand at 5599.163 kb on + strand at 5599.163 kb on + strand at 5599.163 kb on + strand at 5599.163 kb on + strand at 5599.163 kb on + strand at 5599.164 kb on + strand at 5599.165 kb on + strand at 5599.165 kb on + strand at 5599.165 kb on + strand at 5599.165 kb on + strand at 5599.165 kb on + strand at 5599.165 kb on + strand at 5599.170 kb on + strand at 5599.170 kb on + strand at 5599.171 kb on - strand at 5599.171 kb on - strand at 5599.171 kb on - strand at 5599.171 kb on - strand at 5599.171 kb on - strand at 5599.171 kb on - strand at 5599.171 kb on - strand at 5599.171 kb on - strand at 5599.171 kb on - strand at 5599.171 kb on - strand at 5599.171 kb on - strand at 5599.173 kb on - strand at 5599.173 kb on - strand at 5599.175 kb on + strand at 5599.175 kb on + strand at 5599.175 kb on + strand at 5599.175 kb on + strand at 5599.175 kb on + strand at 5599.175 kb on + strand at 5599.175 kb on + strand at 5599.175 kb on + strand at 5599.175 kb on + strand at 5599.175 kb on + strand at 5599.175 kb on + strand at 5599.175 kb on + strand at 5599.175 kb on + strand at 5599.175 kb on + strand at 5599.176 kb on + strand at 5599.176 kb on + strand at 5599.178 kb on - strand at 5599.178 kb on - strand at 5599.183 kb on - strand at 5599.183 kb on - strand at 5599.183 kb on - strand at 5599.183 kb on - strand at 5599.183 kb on - strand at 5599.183 kb on - strand at 5599.183 kb on - strand at 5599.183 kb on - strand at 5599.183 kb on - strand at 5599.183 kb on - strand at 5599.183 kb on - strand at 5599.183 kb on - strand at 5599.183 kb on - strand at 5599.183 kb on - strand at 5599.184 kb on - strand at 5599.201 kb on - strand at 5599.298 kb on + strand at 5599.298 kb on + strand at 5599.298 kb on + strand at 5599.298 kb on + strand at 5599.306 kb on + strand at 5599.306 kb on + strand at 5599.306 kb on + strand at 5599.306 kb on - strand at 5599.314 kb on - strand at 5599.314 kb on - strand at 5599.314 kb on - strand at 5599.314 kb on - strand at 5599.316 kb on + strand at 5599.321 kb on + strand at 5599.324 kb on - strand at 5599.324 kb on - strand at 5599.324 kb on - strand at 5599.335 kb on - strand at 5599.343 kb on - strand at 5599.349 kb on - strand at 5599.349 kb on - strand at 5599.384 kb on + strand, within BWI76_RS26990 at 5599.386 kb on + strand, within BWI76_RS26990 at 5599.392 kb on - strand, within BWI76_RS26990 at 5599.408 kb on - strand at 5599.411 kb on - strand, within BWI76_RS26990 at 5599.423 kb on - strand, within BWI76_RS26990 at 5599.424 kb on + strand, within BWI76_RS26990 at 5599.478 kb on + strand, within BWI76_RS26990 at 5599.485 kb on - strand, within BWI76_RS26990 at 5599.511 kb on - strand, within BWI76_RS26990 at 5599.525 kb on + strand, within BWI76_RS26990 at 5599.525 kb on + strand, within BWI76_RS26990 at 5599.525 kb on + strand, within BWI76_RS26990 at 5599.531 kb on + strand, within BWI76_RS26990 at 5599.532 kb on + strand, within BWI76_RS26990 at 5599.532 kb on + strand, within BWI76_RS26990 at 5599.533 kb on - strand, within BWI76_RS26990 at 5599.533 kb on - strand, within BWI76_RS26990 at 5599.533 kb on - strand, within BWI76_RS26990 at 5599.533 kb on - strand at 5599.537 kb on + strand at 5599.537 kb on + strand at 5599.537 kb on + strand at 5599.537 kb on + strand at 5599.537 kb on + strand at 5599.537 kb on + strand at 5599.539 kb on - strand at 5599.539 kb on - strand at 5599.545 kb on + strand at 5599.545 kb on - strand at 5599.545 kb on - strand at 5599.545 kb on - strand at 5599.545 kb on - strand at 5599.545 kb on - strand at 5599.545 kb on - strand at 5599.545 kb on - strand at 5599.545 kb on - strand at 5599.545 kb on - strand at 5599.545 kb on - strand at 5599.553 kb on + strand at 5599.558 kb on + strand at 5599.558 kb on + strand at 5599.563 kb on + strand at 5599.565 kb on - strand at 5599.571 kb on - strand at 5599.578 kb on + strand at 5599.586 kb on - strand at 5599.591 kb on + strand at 5599.609 kb on - strand at 5599.633 kb on + strand at 5599.641 kb on - strand at 5599.641 kb on - strand at 5599.641 kb on - strand at 5599.658 kb on - strand at 5599.665 kb on + strand at 5599.720 kb on - strand at 5599.744 kb on + strand at 5599.816 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 5,596,508 + -1.0 5,596,508 + -0.7 5,596,591 + BWI76_RS26975 0.13 -0.5 5,596,684 + BWI76_RS26975 0.44 -0.8 5,596,692 - BWI76_RS26975 0.47 -1.7 5,596,729 + BWI76_RS26975 0.60 -0.6 5,596,729 + BWI76_RS26975 0.60 -0.2 5,596,729 + BWI76_RS26975 0.60 +1.0 5,596,740 - BWI76_RS26975 0.63 +0.9 5,596,748 - BWI76_RS26975 0.66 -1.7 5,596,748 - BWI76_RS26975 0.66 +0.3 5,596,763 + BWI76_RS26975 0.71 -0.4 5,596,763 + BWI76_RS26975 0.71 +0.4 5,596,771 - BWI76_RS26975 0.74 +0.8 5,596,772 - BWI76_RS26975 0.74 +0.1 5,596,774 + BWI76_RS26975 0.75 +0.2 5,596,782 - BWI76_RS26975 0.78 -0.5 5,596,782 - BWI76_RS26975 0.78 +0.1 5,596,782 - BWI76_RS26975 0.78 -0.6 5,596,784 + BWI76_RS26975 0.78 +0.2 5,596,784 + BWI76_RS26975 0.78 +0.9 5,596,788 + BWI76_RS26975 0.80 -0.2 5,596,802 + BWI76_RS26975 0.84 +0.2 5,596,820 + +0.8 5,596,828 - -0.2 5,596,953 + +0.2 5,596,989 - -0.6 5,597,063 + +2.0 5,597,063 + +0.3 5,597,071 - -1.0 5,597,159 + BWI76_RS26980 0.23 +0.6 5,597,208 + BWI76_RS26980 0.46 -0.5 5,597,216 - BWI76_RS26980 0.50 -0.6 5,597,218 + BWI76_RS26980 0.51 -1.7 5,597,218 + +1.1 5,597,637 + BWI76_RS26985 0.13 -0.6 5,597,645 - BWI76_RS26985 0.14 +6.2 5,597,649 + BWI76_RS26985 0.14 -0.0 5,597,824 - +0.6 5,598,044 + BWI76_RS26985 0.38 +0.6 5,598,565 + BWI76_RS26985 0.71 -0.3 5,598,570 + BWI76_RS26985 0.71 +1.3 5,598,570 + BWI76_RS26985 0.71 -0.8 5,598,578 + BWI76_RS26985 0.71 +1.1 5,598,727 + BWI76_RS26985 0.81 -0.0 5,598,817 + BWI76_RS26985 0.86 -0.8 5,598,846 - BWI76_RS26985 0.88 +0.1 5,598,864 + BWI76_RS26985 0.89 +0.1 5,598,979 - +0.9 5,599,054 - -0.5 5,599,084 - -0.3 5,599,089 + -0.3 5,599,089 + +0.1 5,599,111 + -2.9 5,599,148 - +1.6 5,599,149 + +0.6 5,599,163 + -0.3 5,599,163 + +0.0 5,599,163 + -1.1 5,599,163 + -1.4 5,599,163 + -0.9 5,599,163 + +0.1 5,599,164 + +0.3 5,599,165 + -0.3 5,599,165 + +0.2 5,599,165 + -1.0 5,599,165 + +0.9 5,599,165 + -0.2 5,599,165 + -0.3 5,599,170 + +0.0 5,599,170 + -0.6 5,599,171 - +0.7 5,599,171 - +0.1 5,599,171 - +3.1 5,599,171 - +3.4 5,599,171 - -1.6 5,599,171 - +0.1 5,599,171 - -0.8 5,599,171 - +0.9 5,599,171 - -0.2 5,599,171 - +1.5 5,599,171 - -1.6 5,599,173 - +0.1 5,599,173 - +0.1 5,599,175 + -0.4 5,599,175 + -0.3 5,599,175 + -0.0 5,599,175 + +0.8 5,599,175 + +0.6 5,599,175 + -0.3 5,599,175 + -0.5 5,599,175 + -1.7 5,599,175 + +0.4 5,599,175 + -0.5 5,599,175 + -1.5 5,599,175 + +0.3 5,599,175 + -0.2 5,599,175 + -0.4 5,599,176 + +1.0 5,599,176 + -2.4 5,599,178 - -0.3 5,599,178 - -2.2 5,599,183 - +0.6 5,599,183 - +0.7 5,599,183 - -0.4 5,599,183 - +1.3 5,599,183 - -1.2 5,599,183 - +0.9 5,599,183 - +1.1 5,599,183 - -1.6 5,599,183 - -2.1 5,599,183 - +1.4 5,599,183 - +0.4 5,599,183 - +0.4 5,599,183 - -1.6 5,599,183 - -0.8 5,599,184 - +0.1 5,599,201 - -0.2 5,599,298 + -0.4 5,599,298 + +0.3 5,599,298 + -0.2 5,599,298 + +0.4 5,599,306 + -0.3 5,599,306 + -1.7 5,599,306 + -1.6 5,599,306 - -0.9 5,599,314 - +0.3 5,599,314 - -0.1 5,599,314 - -0.1 5,599,314 - -1.1 5,599,316 + +0.0 5,599,321 + -0.4 5,599,324 - -0.4 5,599,324 - -0.7 5,599,324 - -0.4 5,599,335 - +0.0 5,599,343 - +0.2 5,599,349 - +0.9 5,599,349 - -0.5 5,599,384 + BWI76_RS26990 0.19 -0.3 5,599,386 + BWI76_RS26990 0.20 +0.8 5,599,392 - BWI76_RS26990 0.23 +0.4 5,599,408 - +1.4 5,599,411 - BWI76_RS26990 0.31 +0.2 5,599,423 - BWI76_RS26990 0.37 +0.6 5,599,424 + BWI76_RS26990 0.38 -1.3 5,599,478 + BWI76_RS26990 0.63 -3.4 5,599,485 - BWI76_RS26990 0.66 +0.1 5,599,511 - BWI76_RS26990 0.78 +3.4 5,599,525 + BWI76_RS26990 0.85 -0.8 5,599,525 + BWI76_RS26990 0.85 -0.9 5,599,525 + BWI76_RS26990 0.85 +1.5 5,599,531 + BWI76_RS26990 0.88 -0.1 5,599,532 + BWI76_RS26990 0.88 -0.4 5,599,532 + BWI76_RS26990 0.88 +0.9 5,599,533 - BWI76_RS26990 0.89 -2.0 5,599,533 - BWI76_RS26990 0.89 -0.8 5,599,533 - BWI76_RS26990 0.89 -0.6 5,599,533 - +2.0 5,599,537 + -1.0 5,599,537 + -0.3 5,599,537 + +0.9 5,599,537 + +1.8 5,599,537 + +0.4 5,599,537 + -0.3 5,599,539 - +2.1 5,599,539 - +0.0 5,599,545 + +0.1 5,599,545 - -0.1 5,599,545 - -0.3 5,599,545 - +1.6 5,599,545 - -2.4 5,599,545 - -0.4 5,599,545 - -1.7 5,599,545 - +0.9 5,599,545 - -0.4 5,599,545 - +0.1 5,599,545 - +0.4 5,599,553 + -0.3 5,599,558 + +0.6 5,599,558 + +0.2 5,599,563 + -0.4 5,599,565 - +0.0 5,599,571 - +0.0 5,599,578 + -0.5 5,599,586 - -0.1 5,599,591 + -0.4 5,599,609 - +0.5 5,599,633 + -0.9 5,599,641 - -0.3 5,599,641 - +0.6 5,599,641 - +1.8 5,599,658 - +0.8 5,599,665 + -0.6 5,599,720 - +0.6 5,599,744 + -2.7 5,599,816 + +0.4
Or see this region's nucleotide sequence