Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26685 and BWI76_RS26690 are separated by 51 nucleotides BWI76_RS26690 and BWI76_RS26695 are separated by 121 nucleotides
BWI76_RS26685: BWI76_RS26685 - glutathione-disulfide reductase, at 5,525,414 to 5,526,766
_RS26685
BWI76_RS26690: BWI76_RS26690 - glutathione S-transferase, at 5,526,818 to 5,527,441
_RS26690
BWI76_RS26695: BWI76_RS26695 - iron-containing alcohol dehydrogenase, at 5,527,563 to 5,528,711
_RS26695
Position (kb) 5526
5527
5528 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5525.845 kb on - strand, within BWI76_RS26685 at 5525.882 kb on - strand, within BWI76_RS26685 at 5526.091 kb on - strand, within BWI76_RS26685 at 5526.159 kb on + strand, within BWI76_RS26685 at 5526.170 kb on + strand, within BWI76_RS26685 at 5526.178 kb on - strand, within BWI76_RS26685 at 5526.440 kb on + strand, within BWI76_RS26685 at 5526.473 kb on - strand, within BWI76_RS26685 at 5526.603 kb on + strand, within BWI76_RS26685 at 5526.756 kb on - strand at 5526.879 kb on - strand at 5526.881 kb on - strand, within BWI76_RS26690 at 5526.954 kb on + strand, within BWI76_RS26690 at 5526.954 kb on + strand, within BWI76_RS26690 at 5526.993 kb on - strand, within BWI76_RS26690 at 5527.052 kb on + strand, within BWI76_RS26690 at 5527.110 kb on + strand, within BWI76_RS26690 at 5527.110 kb on - strand, within BWI76_RS26690 at 5527.297 kb on + strand, within BWI76_RS26690 at 5527.305 kb on - strand, within BWI76_RS26690 at 5527.330 kb on + strand, within BWI76_RS26690 at 5527.351 kb on - strand, within BWI76_RS26690 at 5527.395 kb on + strand at 5527.519 kb on + strand at 5527.581 kb on - strand at 5527.753 kb on - strand, within BWI76_RS26695 at 5527.868 kb on - strand, within BWI76_RS26695 at 5527.987 kb on - strand, within BWI76_RS26695 at 5528.192 kb on - strand, within BWI76_RS26695 at 5528.238 kb on - strand, within BWI76_RS26695 at 5528.289 kb on + strand, within BWI76_RS26695 at 5528.311 kb on - strand, within BWI76_RS26695 at 5528.316 kb on + strand, within BWI76_RS26695 at 5528.316 kb on + strand, within BWI76_RS26695 at 5528.375 kb on + strand, within BWI76_RS26695
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 5,525,845 - BWI76_RS26685 0.32 -0.7 5,525,882 - BWI76_RS26685 0.35 +2.1 5,526,091 - BWI76_RS26685 0.50 -0.3 5,526,159 + BWI76_RS26685 0.55 -0.1 5,526,170 + BWI76_RS26685 0.56 +0.4 5,526,178 - BWI76_RS26685 0.56 +3.0 5,526,440 + BWI76_RS26685 0.76 -1.1 5,526,473 - BWI76_RS26685 0.78 +1.3 5,526,603 + BWI76_RS26685 0.88 -0.5 5,526,756 - -0.4 5,526,879 - -0.1 5,526,881 - BWI76_RS26690 0.10 +4.7 5,526,954 + BWI76_RS26690 0.22 -0.2 5,526,954 + BWI76_RS26690 0.22 -0.1 5,526,993 - BWI76_RS26690 0.28 +0.4 5,527,052 + BWI76_RS26690 0.38 +0.1 5,527,110 + BWI76_RS26690 0.47 +0.9 5,527,110 - BWI76_RS26690 0.47 +0.4 5,527,297 + BWI76_RS26690 0.77 -2.1 5,527,305 - BWI76_RS26690 0.78 -0.4 5,527,330 + BWI76_RS26690 0.82 -0.3 5,527,351 - BWI76_RS26690 0.85 +0.9 5,527,395 + +0.3 5,527,519 + -0.1 5,527,581 - -0.1 5,527,753 - BWI76_RS26695 0.17 +0.4 5,527,868 - BWI76_RS26695 0.27 -0.8 5,527,987 - BWI76_RS26695 0.37 +0.5 5,528,192 - BWI76_RS26695 0.55 +1.1 5,528,238 - BWI76_RS26695 0.59 -0.9 5,528,289 + BWI76_RS26695 0.63 -1.2 5,528,311 - BWI76_RS26695 0.65 -0.4 5,528,316 + BWI76_RS26695 0.66 +1.8 5,528,316 + BWI76_RS26695 0.66 +0.1 5,528,375 + BWI76_RS26695 0.71 -0.2
Or see this region's nucleotide sequence