Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17465

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS17460 and BWI76_RS17465 are separated by 250 nucleotidesBWI76_RS17465 and BWI76_RS17470 are separated by 0 nucleotides BWI76_RS17460: BWI76_RS17460 - ribose-phosphate pyrophosphokinase, at 3,619,819 to 3,620,766 _RS17460 BWI76_RS17465: BWI76_RS17465 - C4-dicarboxylic acid transporter DauA, at 3,621,017 to 3,622,696 _RS17465 BWI76_RS17470: BWI76_RS17470 - MerR family transcriptional regulator, at 3,622,697 to 3,623,743 _RS17470 Position (kb) 3621 3622 3623Strain fitness (log2 ratio) -1 0 1at 3620.880 kb on + strandat 3620.909 kb on - strandat 3621.200 kb on + strand, within BWI76_RS17465at 3621.200 kb on + strand, within BWI76_RS17465at 3621.200 kb on + strand, within BWI76_RS17465at 3621.208 kb on - strand, within BWI76_RS17465at 3621.834 kb on - strand, within BWI76_RS17465at 3622.577 kb on - strandat 3622.577 kb on - strandat 3622.747 kb on + strandat 3622.773 kb on - strandat 3623.299 kb on + strand, within BWI76_RS17470at 3623.597 kb on - strand, within BWI76_RS17470

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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3,620,880 + +1.1
3,620,909 - -0.1
3,621,200 + BWI76_RS17465 0.11 -1.1
3,621,200 + BWI76_RS17465 0.11 -1.0
3,621,200 + BWI76_RS17465 0.11 -1.1
3,621,208 - BWI76_RS17465 0.11 -1.2
3,621,834 - BWI76_RS17465 0.49 -1.6
3,622,577 - -0.8
3,622,577 - -1.2
3,622,747 + -0.9
3,622,773 - +0.2
3,623,299 + BWI76_RS17470 0.57 -1.0
3,623,597 - BWI76_RS17470 0.86 +0.7

Or see this region's nucleotide sequence