Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04090 and BWI76_RS04095 are separated by 14 nucleotides BWI76_RS04095 and BWI76_RS04100 are separated by 91 nucleotides BWI76_RS04100 and BWI76_RS04105 are separated by 217 nucleotides BWI76_RS04105 and BWI76_RS04110 are separated by 123 nucleotides
BWI76_RS04090: BWI76_RS04090 - ribosomal-protein-alanine N-acetyltransferase RimI, at 841,827 to 842,273
_RS04090
BWI76_RS04095: BWI76_RS04095 - dUMP phosphatase, at 842,288 to 842,965
_RS04095
BWI76_RS04100: BWI76_RS04100 - peptide chain release factor 3, at 843,057 to 844,646
_RS04100
BWI76_RS04105: BWI76_RS04105 - molecular chaperone OsmY, at 844,864 to 845,475
_RS04105
BWI76_RS04110: BWI76_RS04110 - DUF1328 domain-containing protein, at 845,599 to 845,760
_RS04110
Position (kb) 843
844
845 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 842.066 kb on + strand, within BWI76_RS04090 at 842.076 kb on - strand, within BWI76_RS04090 at 842.128 kb on + strand, within BWI76_RS04090 at 842.143 kb on + strand, within BWI76_RS04090 at 842.730 kb on - strand, within BWI76_RS04095 at 842.876 kb on - strand, within BWI76_RS04095 at 843.799 kb on - strand, within BWI76_RS04100 at 843.868 kb on + strand, within BWI76_RS04100 at 844.010 kb on - strand, within BWI76_RS04100 at 844.121 kb on + strand, within BWI76_RS04100 at 844.189 kb on + strand, within BWI76_RS04100 at 844.196 kb on - strand, within BWI76_RS04100 at 844.247 kb on + strand, within BWI76_RS04100 at 844.482 kb on - strand, within BWI76_RS04100 at 844.899 kb on - strand at 844.923 kb on - strand at 844.951 kb on + strand, within BWI76_RS04105 at 844.951 kb on + strand, within BWI76_RS04105 at 844.951 kb on + strand, within BWI76_RS04105 at 844.959 kb on - strand, within BWI76_RS04105 at 845.063 kb on - strand, within BWI76_RS04105 at 845.063 kb on - strand, within BWI76_RS04105 at 845.097 kb on + strand, within BWI76_RS04105 at 845.133 kb on - strand, within BWI76_RS04105 at 845.141 kb on + strand, within BWI76_RS04105 at 845.259 kb on + strand, within BWI76_RS04105 at 845.368 kb on - strand, within BWI76_RS04105 at 845.385 kb on - strand, within BWI76_RS04105 at 845.409 kb on + strand, within BWI76_RS04105 at 845.436 kb on - strand at 845.527 kb on + strand at 845.527 kb on + strand at 845.527 kb on + strand at 845.527 kb on - strand at 845.535 kb on - strand at 845.535 kb on - strand at 845.540 kb on - strand at 845.582 kb on + strand at 845.589 kb on + strand at 845.590 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 842,066 + BWI76_RS04090 0.53 -0.6 842,076 - BWI76_RS04090 0.56 +0.0 842,128 + BWI76_RS04090 0.67 -0.8 842,143 + BWI76_RS04090 0.71 +0.4 842,730 - BWI76_RS04095 0.65 -0.5 842,876 - BWI76_RS04095 0.87 +0.7 843,799 - BWI76_RS04100 0.47 +0.9 843,868 + BWI76_RS04100 0.51 -1.1 844,010 - BWI76_RS04100 0.60 -2.8 844,121 + BWI76_RS04100 0.67 -1.3 844,189 + BWI76_RS04100 0.71 +0.3 844,196 - BWI76_RS04100 0.72 -2.6 844,247 + BWI76_RS04100 0.75 -0.6 844,482 - BWI76_RS04100 0.90 -2.2 844,899 - +2.0 844,923 - -0.2 844,951 + BWI76_RS04105 0.14 -0.3 844,951 + BWI76_RS04105 0.14 -0.5 844,951 + BWI76_RS04105 0.14 +0.3 844,959 - BWI76_RS04105 0.16 +0.1 845,063 - BWI76_RS04105 0.33 +1.8 845,063 - BWI76_RS04105 0.33 -0.1 845,097 + BWI76_RS04105 0.38 +0.0 845,133 - BWI76_RS04105 0.44 +0.0 845,141 + BWI76_RS04105 0.45 -0.3 845,259 + BWI76_RS04105 0.65 +0.3 845,368 - BWI76_RS04105 0.82 -0.4 845,385 - BWI76_RS04105 0.85 +0.4 845,409 + BWI76_RS04105 0.89 -0.4 845,436 - +0.3 845,527 + +0.9 845,527 + -1.8 845,527 + -0.3 845,527 - -1.4 845,535 - -0.2 845,535 - +0.1 845,540 - +0.8 845,582 + -0.1 845,589 + +0.5 845,590 - +0.2
Or see this region's nucleotide sequence